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Cluster: Rep_1876_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1876_c_89 Rep_1876_c_89_1 85 2037 - GH13_4
TC Rep_1876_c_89 Rep_1876_c_89_2 2273 3106 - 3.A.1.24.5
TC Rep_1876_c_89 Rep_1876_c_89_3 3134 3787 - 3.A.1.24.5
TC Rep_1876_c_89 Rep_1876_c_89_4 3756 4817 - 3.A.1.24.2
pfam Rep_1876_c_89 Rep_1876_c_89_5 4995 5417 + YgbA_NO
pfam Rep_1876_c_89 Rep_1876_c_89_6 5486 6127 - Flavin_Reduct | RUBY_RBDX
TC Rep_1876_c_89 Rep_1876_c_89_7 6287 7162 + 2.A.7.3.12
TC Rep_1876_c_89 Rep_1876_c_89_8 7216 8019 - 3.A.1.3.27
pfam Rep_1876_c_89 Rep_1876_c_89_9 8242 8700 + DUF441
TC Rep_1876_c_89 Rep_1876_c_89_10 8750 9127 - 1.A.43.1.1
Gene ID: Rep_1876_c_89_1
Type: CAZyme
Location: 85 - 2037 (-)
Gene ID: Rep_1876_c_89_2
Type: TC
Location: 2273 - 3106 (-)
Gene ID: Rep_1876_c_89_3
Type: TC
Location: 3134 - 3787 (-)
Gene ID: Rep_1876_c_89_4
Type: TC
Location: 3756 - 4817 (-)
Gene ID: Rep_1876_c_89_5
Type: pfam
Location: 4995 - 5417 (+)
Gene ID: Rep_1876_c_89_6
Type: pfam
Location: 5486 - 6127 (-)
Gene ID: Rep_1876_c_89_7
Type: TC
Location: 6287 - 7162 (+)
Gene ID: Rep_1876_c_89_8
Type: TC
Location: 7216 - 8019 (-)
Gene ID: Rep_1876_c_89_9
Type: pfam
Location: 8242 - 8700 (+)
Gene ID: Rep_1876_c_89_10
Type: TC
Location: 8750 - 9127 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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