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Cluster: Rep_1876_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1876_c_267 Rep_1876_c_267_1 253 1629 + 2.A.2.1.1
pfam Rep_1876_c_267 Rep_1876_c_267_2 1781 2107 + Multi_Drug_Res
pfam Rep_1876_c_267 Rep_1876_c_267_3 2119 2451 + Multi_Drug_Res
TC Rep_1876_c_267 Rep_1876_c_267_4 2455 3123 - 2.A.115.2.8
TF Rep_1876_c_267 Rep_1876_c_267_5 3120 3551 - MarR
TF Rep_1876_c_267 Rep_1876_c_267_6 3678 4565 + HTH_6
TC Rep_1876_c_267 Rep_1876_c_267_7 4874 5434 + 4.A.3.2.2
TC Rep_1876_c_267 Rep_1876_c_267_8 5488 6177 + 4.A.3.2.2
pfam Rep_1876_c_267 Rep_1876_c_267_9 6306 6527 + PTS_IIB
pfam Rep_1876_c_267 Rep_1876_c_267_10 6545 6868 + PTS_IIA
CAZyme Rep_1876_c_267 Rep_1876_c_267_11 6884 7960 + GH1
Gene ID: Rep_1876_c_267_1
Type: TC
Location: 253 - 1629 (+)
Gene ID: Rep_1876_c_267_2
Type: pfam
Location: 1781 - 2107 (+)
Gene ID: Rep_1876_c_267_3
Type: pfam
Location: 2119 - 2451 (+)
Gene ID: Rep_1876_c_267_4
Type: TC
Location: 2455 - 3123 (-)
Gene ID: Rep_1876_c_267_5
Type: TF
Location: 3120 - 3551 (-)
Gene ID: Rep_1876_c_267_6
Type: TF
Location: 3678 - 4565 (+)
Gene ID: Rep_1876_c_267_7
Type: TC
Location: 4874 - 5434 (+)
Gene ID: Rep_1876_c_267_8
Type: TC
Location: 5488 - 6177 (+)
Gene ID: Rep_1876_c_267_9
Type: pfam
Location: 6306 - 6527 (+)
Gene ID: Rep_1876_c_267_10
Type: pfam
Location: 6545 - 6868 (+)
Gene ID: Rep_1876_c_267_11
Type: CAZyme
Location: 6884 - 7960 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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