Cluster: Rep_1876_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1876
- CGC Family ID: CGCFAM_10567
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1876_c_250 | Rep_1876_c_250_3 | 2879 | 3637 | - | 3.A.1.5.37 |
| TC | Rep_1876_c_250 | Rep_1876_c_250_4 | 3649 | 4419 | - | 3.A.1.5.43 |
| STP | Rep_1876_c_250 | Rep_1876_c_250_5 | 4431 | 5972 | - | SBP_bac_5 |
| TC | Rep_1876_c_250 | Rep_1876_c_250_6 | 5992 | 6783 | - | 3.A.1.5.11 |
| TC | Rep_1876_c_250 | Rep_1876_c_250_7 | 6788 | 7729 | - | 3.A.1.5.20 |
| pfam | Rep_1876_c_250 | Rep_1876_c_250_8 | 7735 | 8454 | - | Ubie_methyltran | TehB | PrmA | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | Rep_1876_c_250 | Rep_1876_c_250_9 | 8790 | 10415 | + | GH13_31 |
Gene ID: Rep_1876_c_250_3
Type: TC
Location: 2879 - 3637 (-)
Type: TC
Location: 2879 - 3637 (-)
Gene ID: Rep_1876_c_250_4
Type: TC
Location: 3649 - 4419 (-)
Type: TC
Location: 3649 - 4419 (-)
Gene ID: Rep_1876_c_250_5
Type: STP
Location: 4431 - 5972 (-)
Type: STP
Location: 4431 - 5972 (-)
Gene ID: Rep_1876_c_250_6
Type: TC
Location: 5992 - 6783 (-)
Type: TC
Location: 5992 - 6783 (-)
Gene ID: Rep_1876_c_250_7
Type: TC
Location: 6788 - 7729 (-)
Type: TC
Location: 6788 - 7729 (-)
Gene ID: Rep_1876_c_250_8
Type: pfam
Location: 7735 - 8454 (-)
Type: pfam
Location: 7735 - 8454 (-)
Gene ID: Rep_1876_c_250_9
Type: CAZyme
Location: 8790 - 10415 (+)
Type: CAZyme
Location: 8790 - 10415 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Megamonas
Species
Megamonas hypermegale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.