Cluster: Rep_1876_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1876
- CGC Family ID: CGCFAM_01642
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1876_c_195 | Rep_1876_c_195_7 | 7384 | 8391 | + | GH177 |
| pfam | Rep_1876_c_195 | Rep_1876_c_195_8 | 8449 | 9282 | + | AP_endonuc_2 |
| pfam | Rep_1876_c_195 | Rep_1876_c_195_9 | 9390 | 10310 | + | AP_endonuc_2 |
| TC | Rep_1876_c_195 | Rep_1876_c_195_10 | 10454 | 11848 | + | 2.A.1.1.26 |
| TC | Rep_1876_c_195 | Rep_1876_c_195_11 | 11872 | 12183 | + | 4.A.3.1.2 |
Gene ID: Rep_1876_c_195_7
Type: CAZyme
Location: 7384 - 8391 (+)
Type: CAZyme
Location: 7384 - 8391 (+)
Gene ID: Rep_1876_c_195_8
Type: pfam
Location: 8449 - 9282 (+)
Type: pfam
Location: 8449 - 9282 (+)
Gene ID: Rep_1876_c_195_9
Type: pfam
Location: 9390 - 10310 (+)
Type: pfam
Location: 9390 - 10310 (+)
Gene ID: Rep_1876_c_195_10
Type: TC
Location: 10454 - 11848 (+)
Type: TC
Location: 10454 - 11848 (+)
Gene ID: Rep_1876_c_195_11
Type: TC
Location: 11872 - 12183 (+)
Type: TC
Location: 11872 - 12183 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Selenomonadales
Family
Selenomonadaceae
Genus
Megamonas
Species
Megamonas hypermegale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1876_c_195_8 | vegan > omnivore | 4.00938 | 0.01188 |
| Rep_1876_c_195_8 | vegan > vegetarian | 3.41447 | 0.01185 |