dbCAN Logo

Cluster: Rep_1869_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1869_c_5 Rep_1869_c_5_7 6100 7314 - 1.B.23.1.23
TC Rep_1869_c_5 Rep_1869_c_5_8 7337 8113 - 3.A.1.5.43
TC Rep_1869_c_5 Rep_1869_c_5_9 8115 8939 - 3.A.1.5.43
TC Rep_1869_c_5 Rep_1869_c_5_10 8939 9760 - 3.A.1.5.43
TC Rep_1869_c_5 Rep_1869_c_5_11 9760 10701 - 3.A.1.5.3
TC Rep_1869_c_5 Rep_1869_c_5_12 10760 12343 - 3.A.1.5.43
TF Rep_1869_c_5 Rep_1869_c_5_13 12444 13346 - HTH_1
pfam Rep_1869_c_5 Rep_1869_c_5_14 13769 14734 + AstE_AspA_cat
CAZyme Rep_1869_c_5 Rep_1869_c_5_15 14816 16213 - AA4
CAZyme Rep_1869_c_5 Rep_1869_c_5_16 16252 17655 - AA4
Gene ID: Rep_1869_c_5_7
Type: TC
Location: 6100 - 7314 (-)
Gene ID: Rep_1869_c_5_8
Type: TC
Location: 7337 - 8113 (-)
Gene ID: Rep_1869_c_5_9
Type: TC
Location: 8115 - 8939 (-)
Gene ID: Rep_1869_c_5_10
Type: TC
Location: 8939 - 9760 (-)
Gene ID: Rep_1869_c_5_11
Type: TC
Location: 9760 - 10701 (-)
Gene ID: Rep_1869_c_5_12
Type: TC
Location: 10760 - 12343 (-)
Gene ID: Rep_1869_c_5_13
Type: TF
Location: 12444 - 13346 (-)
Gene ID: Rep_1869_c_5_14
Type: pfam
Location: 13769 - 14734 (+)
Gene ID: Rep_1869_c_5_15
Type: CAZyme
Location: 14816 - 16213 (-)
Gene ID: Rep_1869_c_5_16
Type: CAZyme
Location: 16252 - 17655 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List