Cluster: Rep_1863_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1863
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1863_c_18 | Rep_1863_c_18_17 | 15637 | 17595 | + | 1.B.14.8.2 |
| pfam | Rep_1863_c_18 | Rep_1863_c_18_18 | 17651 | 18550 | - | PDDEXK_2 |
| TC | Rep_1863_c_18 | Rep_1863_c_18_19 | 18897 | 20834 | + | 1.B.14.3.1 |
| NULL(UNKNOWN) | Rep_1863_c_18 | Rep_1863_c_18_20 | 20964 | 21518 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1863_c_18 | Rep_1863_c_18_21 | 21544 | 22380 | + | 3.A.1.14.8 |
| NULL(UNKNOWN) | Rep_1863_c_18 | Rep_1863_c_18_22 | 22384 | 24051 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1863_c_18 | Rep_1863_c_18_23 | 24054 | 25706 | + | 3.A.1.30.1 |
| pfam | Rep_1863_c_18 | Rep_1863_c_18_24 | 25675 | 26550 | + | CbiQ |
| pfam | Rep_1863_c_18 | Rep_1863_c_18_25 | 26547 | 27968 | + | PQQ | PQQ_2 |
| TC | Rep_1863_c_18 | Rep_1863_c_18_26 | 27958 | 29667 | + | 3.A.1.106.14 |
| NULL(UNKNOWN) | Rep_1863_c_18 | Rep_1863_c_18_27 | 29681 | 30040 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1863_c_18 | Rep_1863_c_18_28 | 30238 | 31245 | + | GH33 |
Gene ID: Rep_1863_c_18_17
Type: TC
Location: 15637 - 17595 (+)
Type: TC
Location: 15637 - 17595 (+)
Gene ID: Rep_1863_c_18_18
Type: pfam
Location: 17651 - 18550 (-)
Type: pfam
Location: 17651 - 18550 (-)
Gene ID: Rep_1863_c_18_19
Type: TC
Location: 18897 - 20834 (+)
Type: TC
Location: 18897 - 20834 (+)
Gene ID: Rep_1863_c_18_20
Type:
Location: 20964 - 21518 (+)
Type:
Location: 20964 - 21518 (+)
Gene ID: Rep_1863_c_18_21
Type: TC
Location: 21544 - 22380 (+)
Type: TC
Location: 21544 - 22380 (+)
Gene ID: Rep_1863_c_18_22
Type:
Location: 22384 - 24051 (+)
Type:
Location: 22384 - 24051 (+)
Gene ID: Rep_1863_c_18_23
Type: TC
Location: 24054 - 25706 (+)
Type: TC
Location: 24054 - 25706 (+)
Gene ID: Rep_1863_c_18_24
Type: pfam
Location: 25675 - 26550 (+)
Type: pfam
Location: 25675 - 26550 (+)
Gene ID: Rep_1863_c_18_25
Type: pfam
Location: 26547 - 27968 (+)
Type: pfam
Location: 26547 - 27968 (+)
Gene ID: Rep_1863_c_18_26
Type: TC
Location: 27958 - 29667 (+)
Type: TC
Location: 27958 - 29667 (+)
Gene ID: Rep_1863_c_18_27
Type:
Location: 29681 - 30040 (+)
Type:
Location: 29681 - 30040 (+)
Gene ID: Rep_1863_c_18_28
Type: CAZyme
Location: 30238 - 31245 (+)
Type: CAZyme
Location: 30238 - 31245 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.