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Cluster: Rep_1863_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1863_c_0 Rep_1863_c_0_60 61346 62605 + 2.A.61.1.3
STP Rep_1863_c_0 Rep_1863_c_0_61 63088 63390 + NTP_transf_2
pfam Rep_1863_c_0 Rep_1863_c_0_62 63387 63722 + HepT-like
TC Rep_1863_c_0 Rep_1863_c_0_63 64119 64742 + 9.B.18.1.2
pfam Rep_1863_c_0 Rep_1863_c_0_64 64739 66130 + NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix
CAZyme Rep_1863_c_0 Rep_1863_c_0_65 66163 66909 + GT26
CAZyme Rep_1863_c_0 Rep_1863_c_0_66 66909 67994 + GT4
CAZyme Rep_1863_c_0 Rep_1863_c_0_67 67991 68962 + GT32
CAZyme Rep_1863_c_0 Rep_1863_c_0_68 69070 69933 + GT2
pfam Rep_1863_c_0 Rep_1863_c_0_69 69930 71009 + EpsG
pfam Rep_1863_c_0 Rep_1863_c_0_70 71012 71371 + Polysacc_synt_C
CAZyme Rep_1863_c_0 Rep_1863_c_0_71 71435 72409 + GT2
Gene ID: Rep_1863_c_0_60
Type: TC
Location: 61346 - 62605 (+)
Gene ID: Rep_1863_c_0_61
Type: STP
Location: 63088 - 63390 (+)
Gene ID: Rep_1863_c_0_62
Type: pfam
Location: 63387 - 63722 (+)
Gene ID: Rep_1863_c_0_63
Type: TC
Location: 64119 - 64742 (+)
Gene ID: Rep_1863_c_0_64
Type: pfam
Location: 64739 - 66130 (+)
Gene ID: Rep_1863_c_0_65
Type: CAZyme
Location: 66163 - 66909 (+)
Gene ID: Rep_1863_c_0_66
Type: CAZyme
Location: 66909 - 67994 (+)
Gene ID: Rep_1863_c_0_67
Type: CAZyme
Location: 67991 - 68962 (+)
Gene ID: Rep_1863_c_0_68
Type: CAZyme
Location: 69070 - 69933 (+)
Gene ID: Rep_1863_c_0_69
Type: pfam
Location: 69930 - 71009 (+)
Gene ID: Rep_1863_c_0_70
Type: pfam
Location: 71012 - 71371 (+)
Gene ID: Rep_1863_c_0_71
Type: CAZyme
Location: 71435 - 72409 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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