Cluster: Rep_1863_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1863
- CGC Family ID: CGCFAM_00220
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1863_c_0 | Rep_1863_c_0_3 | 2446 | 3069 | + | 9.B.18.1.2 |
| pfam | Rep_1863_c_0 | Rep_1863_c_0_4 | 3098 | 4303 | + | GARS_A | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | ATP-grasp_4 | LAL_C2 |
| CAZyme | Rep_1863_c_0 | Rep_1863_c_0_5 | 4378 | 5625 | + | GT4 |
Gene ID: Rep_1863_c_0_3
Type: TC
Location: 2446 - 3069 (+)
Type: TC
Location: 2446 - 3069 (+)
Gene ID: Rep_1863_c_0_4
Type: pfam
Location: 3098 - 4303 (+)
Type: pfam
Location: 3098 - 4303 (+)
Gene ID: Rep_1863_c_0_5
Type: CAZyme
Location: 4378 - 5625 (+)
Type: CAZyme
Location: 4378 - 5625 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.