Cluster: Rep_1858_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1858
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1858_c_3 | Rep_1858_c_3_56 | 66763 | 67620 | + | CE4 |
| pfam | Rep_1858_c_3 | Rep_1858_c_3_57 | 67620 | 68453 | + | Polysacc_deac_1 |
| STP | Rep_1858_c_3 | Rep_1858_c_3_58 | 68574 | 69410 | + | SBP_bac_3 |
| TC | Rep_1858_c_3 | Rep_1858_c_3_59 | 69427 | 70083 | + | 3.A.1.3.15 |
| TC | Rep_1858_c_3 | Rep_1858_c_3_60 | 70076 | 70801 | + | 3.A.1.3.15 |
Gene ID: Rep_1858_c_3_56
Type: CAZyme
Location: 66763 - 67620 (+)
Type: CAZyme
Location: 66763 - 67620 (+)
Gene ID: Rep_1858_c_3_57
Type: pfam
Location: 67620 - 68453 (+)
Type: pfam
Location: 67620 - 68453 (+)
Gene ID: Rep_1858_c_3_58
Type: STP
Location: 68574 - 69410 (+)
Type: STP
Location: 68574 - 69410 (+)
Gene ID: Rep_1858_c_3_59
Type: TC
Location: 69427 - 70083 (+)
Type: TC
Location: 69427 - 70083 (+)
Gene ID: Rep_1858_c_3_60
Type: TC
Location: 70076 - 70801 (+)
Type: TC
Location: 70076 - 70801 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.