Cluster: Rep_1858_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1858
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1858_c_3 | Rep_1858_c_3_8 | 7446 | 8564 | + | 2.A.6.2.40 |
| TC | Rep_1858_c_3 | Rep_1858_c_3_9 | 8564 | 11650 | + | 2.A.6.3.1 |
| pfam | Rep_1858_c_3 | Rep_1858_c_3_10 | 11653 | 12588 | + | RNase_HII |
| pfam | Rep_1858_c_3 | Rep_1858_c_3_11 | 12594 | 13442 | + | YdjC |
| TC | Rep_1858_c_3 | Rep_1858_c_3_12 | 13483 | 14502 | + | 4.D.2.1.4 |
| CAZyme | Rep_1858_c_3 | Rep_1858_c_3_13 | 14537 | 16096 | + | GT83 |
Gene ID: Rep_1858_c_3_8
Type: TC
Location: 7446 - 8564 (+)
Type: TC
Location: 7446 - 8564 (+)
Gene ID: Rep_1858_c_3_9
Type: TC
Location: 8564 - 11650 (+)
Type: TC
Location: 8564 - 11650 (+)
Gene ID: Rep_1858_c_3_10
Type: pfam
Location: 11653 - 12588 (+)
Type: pfam
Location: 11653 - 12588 (+)
Gene ID: Rep_1858_c_3_11
Type: pfam
Location: 12594 - 13442 (+)
Type: pfam
Location: 12594 - 13442 (+)
Gene ID: Rep_1858_c_3_12
Type: TC
Location: 13483 - 14502 (+)
Type: TC
Location: 13483 - 14502 (+)
Gene ID: Rep_1858_c_3_13
Type: CAZyme
Location: 14537 - 16096 (+)
Type: CAZyme
Location: 14537 - 16096 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Acidaminococcales
Family
Acidaminococcaceae
Genus
Phascolarctobacterium_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.