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Cluster: Rep_1858_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1858_c_1 Rep_1858_c_1_179 183055 184947 + 3.A.1.120.6
TC Rep_1858_c_1 Rep_1858_c_1_180 185093 186451 + 2.A.66.1.41
NULL(UNKNOWN) Rep_1858_c_1 Rep_1858_c_1_181 186828 187490 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1858_c_1 Rep_1858_c_1_182 187861 188619 + GT2
pfam Rep_1858_c_1 Rep_1858_c_1_183 188690 190483 - Sulfatase
pfam Rep_1858_c_1 Rep_1858_c_1_184 190632 191912 + A-2_8-polyST
CAZyme Rep_1858_c_1 Rep_1858_c_1_185 191905 193020 + GT4
CAZyme Rep_1858_c_1 Rep_1858_c_1_186 193004 193999 + GT8
pfam Rep_1858_c_1 Rep_1858_c_1_187 194098 194571 + Acyl_transf_3
CAZyme Rep_1858_c_1 Rep_1858_c_1_188 194638 195570 + GT2
Gene ID: Rep_1858_c_1_179
Type: TC
Location: 183055 - 184947 (+)
Gene ID: Rep_1858_c_1_180
Type: TC
Location: 185093 - 186451 (+)
Gene ID: Rep_1858_c_1_181
Type:
Location: 186828 - 187490 (-)
Gene ID: Rep_1858_c_1_182
Type: CAZyme
Location: 187861 - 188619 (+)
Gene ID: Rep_1858_c_1_183
Type: pfam
Location: 188690 - 190483 (-)
Gene ID: Rep_1858_c_1_184
Type: pfam
Location: 190632 - 191912 (+)
Gene ID: Rep_1858_c_1_185
Type: CAZyme
Location: 191905 - 193020 (+)
Gene ID: Rep_1858_c_1_186
Type: CAZyme
Location: 193004 - 193999 (+)
Gene ID: Rep_1858_c_1_187
Type: pfam
Location: 194098 - 194571 (+)
Gene ID: Rep_1858_c_1_188
Type: CAZyme
Location: 194638 - 195570 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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