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Cluster: Rep_1858_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1858_c_10 Rep_1858_c_10_19 20513 22102 + GT83
TC Rep_1858_c_10 Rep_1858_c_10_20 22256 23458 + 2.A.1.59.4
NULL(UNKNOWN) Rep_1858_c_10 Rep_1858_c_10_21 23682 23849 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1858_c_10 Rep_1858_c_10_22 23882 25228 + 2.A.25.1.4
NULL(UNKNOWN) Rep_1858_c_10 Rep_1858_c_10_23 25456 25614 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1858_c_10 Rep_1858_c_10_24 25717 27096 + 2.A.25.1.4
TC Rep_1858_c_10 Rep_1858_c_10_25 27326 27691 + 9.B.55.2.1
pfam Rep_1858_c_10 Rep_1858_c_10_26 28015 28770 + TauE
TC Rep_1858_c_10 Rep_1858_c_10_27 28912 29736 + 3.A.1.26.7
TC Rep_1858_c_10 Rep_1858_c_10_28 29727 30584 + 3.A.1.26.9
TC Rep_1858_c_10 Rep_1858_c_10_29 30584 31399 + 3.A.1.25.6
Gene ID: Rep_1858_c_10_19
Type: CAZyme
Location: 20513 - 22102 (+)
Gene ID: Rep_1858_c_10_20
Type: TC
Location: 22256 - 23458 (+)
Gene ID: Rep_1858_c_10_21
Type:
Location: 23682 - 23849 (+)
Gene ID: Rep_1858_c_10_22
Type: TC
Location: 23882 - 25228 (+)
Gene ID: Rep_1858_c_10_23
Type:
Location: 25456 - 25614 (+)
Gene ID: Rep_1858_c_10_24
Type: TC
Location: 25717 - 27096 (+)
Gene ID: Rep_1858_c_10_25
Type: TC
Location: 27326 - 27691 (+)
Gene ID: Rep_1858_c_10_26
Type: pfam
Location: 28015 - 28770 (+)
Gene ID: Rep_1858_c_10_27
Type: TC
Location: 28912 - 29736 (+)
Gene ID: Rep_1858_c_10_28
Type: TC
Location: 29727 - 30584 (+)
Gene ID: Rep_1858_c_10_29
Type: TC
Location: 30584 - 31399 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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