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Cluster: Rep_1858_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1858_c_0 Rep_1858_c_0_43 48193 49596 + AA4
pfam Rep_1858_c_0 Rep_1858_c_0_44 49807 50094 + LysM
NULL(UNKNOWN) Rep_1858_c_0 Rep_1858_c_0_45 50356 50784 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1858_c_0 Rep_1858_c_0_46 50852 51922 - 3.A.1.1.16
TC Rep_1858_c_0 Rep_1858_c_0_47 51925 53622 - 3.A.1.20.4
TC Rep_1858_c_0 Rep_1858_c_0_48 53622 54713 - 3.A.1.1.16
STP Rep_1858_c_0 Rep_1858_c_0_49 54811 55842 - SBP_bac_1
TF Rep_1858_c_0 Rep_1858_c_0_50 56129 56335 - CSD
TC Rep_1858_c_0 Rep_1858_c_0_51 56461 57108 - 2.A.115.2.8
Gene ID: Rep_1858_c_0_43
Type: CAZyme
Location: 48193 - 49596 (+)
Gene ID: Rep_1858_c_0_44
Type: pfam
Location: 49807 - 50094 (+)
Gene ID: Rep_1858_c_0_45
Type:
Location: 50356 - 50784 (+)
Gene ID: Rep_1858_c_0_46
Type: TC
Location: 50852 - 51922 (-)
Gene ID: Rep_1858_c_0_47
Type: TC
Location: 51925 - 53622 (-)
Gene ID: Rep_1858_c_0_48
Type: TC
Location: 53622 - 54713 (-)
Gene ID: Rep_1858_c_0_49
Type: STP
Location: 54811 - 55842 (-)
Gene ID: Rep_1858_c_0_50
Type: TF
Location: 56129 - 56335 (-)
Gene ID: Rep_1858_c_0_51
Type: TC
Location: 56461 - 57108 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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