Cluster: Rep_184_CGC2
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_184
- CGC Family ID: CGCFAM_10513
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_184_c_0 | Rep_184_c_0_96 | 125026 | 128118 | - | 2.A.6.1.5 |
| pfam | Rep_184_c_0 | Rep_184_c_0_97 | 128176 | 129315 | - | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | Rep_184_c_0 | Rep_184_c_0_98 | 129509 | 131113 | - | 2.A.21.3.19 |
| STP | Rep_184_c_0 | Rep_184_c_0_99 | 131258 | 134287 | - | B12-binding | B12-binding_2 |
| CAZyme | Rep_184_c_0 | Rep_184_c_0_100 | 134367 | 136610 | - | GH31_3 |
| pfam | Rep_184_c_0 | Rep_184_c_0_101 | 137217 | 138539 | + | OEP | OEP |
| TC | Rep_184_c_0 | Rep_184_c_0_102 | 138610 | 139707 | + | 8.A.1.1.2 |
| NULL(UNKNOWN) | Rep_184_c_0 | Rep_184_c_0_103 | 139772 | 141448 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_184_c_0 | Rep_184_c_0_104 | 141505 | 142389 | + | HTH_AraC |
| CAZyme | Rep_184_c_0 | Rep_184_c_0_105 | 142540 | 144330 | - | GH141 |
| TC | Rep_184_c_0 | Rep_184_c_0_106 | 144577 | 146463 | - | 3.A.18.1.1 |
| TC | Rep_184_c_0 | Rep_184_c_0_107 | 147154 | 150324 | + | 1.B.14.6.1 |
| pfam | Rep_184_c_0 | Rep_184_c_0_108 | 150427 | 151965 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_184_c_0 | Rep_184_c_0_109 | 151990 | 153852 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_184_c_0 | Rep_184_c_0_110 | 154060 | 155145 | + | GH16_3 |
| CAZyme | Rep_184_c_0 | Rep_184_c_0_111 | 155256 | 156479 | + | GH5_46 |
| CAZyme | Rep_184_c_0 | Rep_184_c_0_112 | 156526 | 158757 | + | GH3 |
| CAZyme | Rep_184_c_0 | Rep_184_c_0_113 | 158831 | 161092 | + | GH3 |
Gene ID: Rep_184_c_0_96
Type: TC
Location: 125026 - 128118 (-)
Type: TC
Location: 125026 - 128118 (-)
Gene ID: Rep_184_c_0_97
Type: pfam
Location: 128176 - 129315 (-)
Type: pfam
Location: 128176 - 129315 (-)
Gene ID: Rep_184_c_0_98
Type: TC
Location: 129509 - 131113 (-)
Type: TC
Location: 129509 - 131113 (-)
Gene ID: Rep_184_c_0_99
Type: STP
Location: 131258 - 134287 (-)
Type: STP
Location: 131258 - 134287 (-)
Gene ID: Rep_184_c_0_100
Type: CAZyme
Location: 134367 - 136610 (-)
Type: CAZyme
Location: 134367 - 136610 (-)
Gene ID: Rep_184_c_0_101
Type: pfam
Location: 137217 - 138539 (+)
Type: pfam
Location: 137217 - 138539 (+)
Gene ID: Rep_184_c_0_102
Type: TC
Location: 138610 - 139707 (+)
Type: TC
Location: 138610 - 139707 (+)
Gene ID: Rep_184_c_0_103
Type:
Location: 139772 - 141448 (+)
Type:
Location: 139772 - 141448 (+)
Gene ID: Rep_184_c_0_104
Type: TF
Location: 141505 - 142389 (+)
Type: TF
Location: 141505 - 142389 (+)
Gene ID: Rep_184_c_0_105
Type: CAZyme
Location: 142540 - 144330 (-)
Type: CAZyme
Location: 142540 - 144330 (-)
Gene ID: Rep_184_c_0_106
Type: TC
Location: 144577 - 146463 (-)
Type: TC
Location: 144577 - 146463 (-)
Gene ID: Rep_184_c_0_107
Type: TC
Location: 147154 - 150324 (+)
Type: TC
Location: 147154 - 150324 (+)
Gene ID: Rep_184_c_0_108
Type: pfam
Location: 150427 - 151965 (+)
Type: pfam
Location: 150427 - 151965 (+)
Gene ID: Rep_184_c_0_109
Type:
Location: 151990 - 153852 (+)
Type:
Location: 151990 - 153852 (+)
Gene ID: Rep_184_c_0_110
Type: CAZyme
Location: 154060 - 155145 (+)
Type: CAZyme
Location: 154060 - 155145 (+)
Gene ID: Rep_184_c_0_111
Type: CAZyme
Location: 155256 - 156479 (+)
Type: CAZyme
Location: 155256 - 156479 (+)
Gene ID: Rep_184_c_0_112
Type: CAZyme
Location: 156526 - 158757 (+)
Type: CAZyme
Location: 156526 - 158757 (+)
Gene ID: Rep_184_c_0_113
Type: CAZyme
Location: 158831 - 161092 (+)
Type: CAZyme
Location: 158831 - 161092 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000433175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.