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Cluster: Rep_1846_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1846_c_50 Rep_1846_c_50_11 11411 12622 + GT2
pfam Rep_1846_c_50 Rep_1846_c_50_12 12725 14326 + DUF4127
peptidase Rep_1846_c_50 Rep_1846_c_50_13 14361 15659 + M20.UPD
TC Rep_1846_c_50 Rep_1846_c_50_14 15838 17106 + 2.A.40.1.1
peptidase Rep_1846_c_50 Rep_1846_c_50_15 17214 18761 + C26.A21
TC Rep_1846_c_50 Rep_1846_c_50_16 19180 19959 + 3.A.1.105.9
pfam Rep_1846_c_50 Rep_1846_c_50_17 19963 20760 + ABC2_membrane
TC Rep_1846_c_50 Rep_1846_c_50_18 21251 21817 + 1.A.78.2.3
TF Rep_1846_c_50 Rep_1846_c_50_19 21943 22854 + HTH_1
peptidase Rep_1846_c_50 Rep_1846_c_50_20 22946 23947 + S09.UPC
TC Rep_1846_c_50 Rep_1846_c_50_21 23968 24966 + 8.A.5.1.4
Gene ID: Rep_1846_c_50_11
Type: CAZyme
Location: 11411 - 12622 (+)
Gene ID: Rep_1846_c_50_12
Type: pfam
Location: 12725 - 14326 (+)
Gene ID: Rep_1846_c_50_13
Type: peptidase
Location: 14361 - 15659 (+)
Gene ID: Rep_1846_c_50_14
Type: TC
Location: 15838 - 17106 (+)
Gene ID: Rep_1846_c_50_15
Type: peptidase
Location: 17214 - 18761 (+)
Gene ID: Rep_1846_c_50_16
Type: TC
Location: 19180 - 19959 (+)
Gene ID: Rep_1846_c_50_17
Type: pfam
Location: 19963 - 20760 (+)
Gene ID: Rep_1846_c_50_18
Type: TC
Location: 21251 - 21817 (+)
Gene ID: Rep_1846_c_50_19
Type: TF
Location: 21943 - 22854 (+)
Gene ID: Rep_1846_c_50_20
Type: peptidase
Location: 22946 - 23947 (+)
Gene ID: Rep_1846_c_50_21
Type: TC
Location: 23968 - 24966 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1846_c_50_15 vegan > omnivore 1.51314 0.00861

🧭 Explore Read Mapping of CGC

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