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Cluster: Rep_1845_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1845_c_0 Rep_1845_c_0_1885 1982170 1984152 - 2.A.56.1.4
pfam Rep_1845_c_0 Rep_1845_c_0_1886 1984149 1984691 - DUF1850
STP Rep_1845_c_0 Rep_1845_c_0_1887 1984712 1985686 - SBP_bac_3
TC Rep_1845_c_0 Rep_1845_c_0_1888 1986467 1988092 + 2.A.58.2.2
pfam Rep_1845_c_0 Rep_1845_c_0_1889 1988422 1990695 + Ribonuc_red_lgC
pfam Rep_1845_c_0 Rep_1845_c_0_1890 1990897 1992807 + Sulfatase
CAZyme Rep_1845_c_0 Rep_1845_c_0_1891 1992954 1993889 + GT8
pfam Rep_1845_c_0 Rep_1845_c_0_1892 1993953 1995140 + Wzy_C
CAZyme Rep_1845_c_0 Rep_1845_c_0_1893 1995137 1995919 + GT25
CAZyme Rep_1845_c_0 Rep_1845_c_0_1894 1995903 1996991 + GT9
CAZyme Rep_1845_c_0 Rep_1845_c_0_1895 1996988 1998004 + GT8
Gene ID: Rep_1845_c_0_1885
Type: TC
Location: 1982170 - 1984152 (-)
Gene ID: Rep_1845_c_0_1886
Type: pfam
Location: 1984149 - 1984691 (-)
Gene ID: Rep_1845_c_0_1887
Type: STP
Location: 1984712 - 1985686 (-)
Gene ID: Rep_1845_c_0_1888
Type: TC
Location: 1986467 - 1988092 (+)
Gene ID: Rep_1845_c_0_1889
Type: pfam
Location: 1988422 - 1990695 (+)
Gene ID: Rep_1845_c_0_1890
Type: pfam
Location: 1990897 - 1992807 (+)
Gene ID: Rep_1845_c_0_1891
Type: CAZyme
Location: 1992954 - 1993889 (+)
Gene ID: Rep_1845_c_0_1892
Type: pfam
Location: 1993953 - 1995140 (+)
Gene ID: Rep_1845_c_0_1893
Type: CAZyme
Location: 1995137 - 1995919 (+)
Gene ID: Rep_1845_c_0_1894
Type: CAZyme
Location: 1995903 - 1996991 (+)
Gene ID: Rep_1845_c_0_1895
Type: CAZyme
Location: 1996988 - 1998004 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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