dbCAN Logo

Cluster: Rep_1837_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1837_c_3 Rep_1837_c_3_153 179472 181175 - 2.A.33.1.1
pfam Rep_1837_c_3 Rep_1837_c_3_154 181347 181910 + Ribosomal_S30AE | Ribosom_S30AE_C
TC Rep_1837_c_3 Rep_1837_c_3_155 182055 182888 - 3.A.1.3.10
TC Rep_1837_c_3 Rep_1837_c_3_156 182907 183560 - 3.A.1.3.14
TC Rep_1837_c_3 Rep_1837_c_3_157 183698 184549 - 3.A.1.3.15
pfam Rep_1837_c_3 Rep_1837_c_3_158 184647 185330 + Acetyltransf_1 | Acetyltransf_4
TC Rep_1837_c_3 Rep_1837_c_3_159 185367 186752 - 2.A.1.3.61
pfam Rep_1837_c_3 Rep_1837_c_3_160 187058 187471 + DUF997
TC Rep_1837_c_3 Rep_1837_c_3_161 187468 189057 + 2.A.21.1.1
pfam Rep_1837_c_3 Rep_1837_c_3_162 189057 189539 + VanZ
pfam Rep_1837_c_3 Rep_1837_c_3_163 189597 190070 + Usp
CAZyme Rep_1837_c_3 Rep_1837_c_3_164 190078 191241 - GT2
Gene ID: Rep_1837_c_3_153
Type: TC
Location: 179472 - 181175 (-)
Gene ID: Rep_1837_c_3_154
Type: pfam
Location: 181347 - 181910 (+)
Gene ID: Rep_1837_c_3_155
Type: TC
Location: 182055 - 182888 (-)
Gene ID: Rep_1837_c_3_156
Type: TC
Location: 182907 - 183560 (-)
Gene ID: Rep_1837_c_3_157
Type: TC
Location: 183698 - 184549 (-)
Gene ID: Rep_1837_c_3_158
Type: pfam
Location: 184647 - 185330 (+)
Gene ID: Rep_1837_c_3_159
Type: TC
Location: 185367 - 186752 (-)
Gene ID: Rep_1837_c_3_160
Type: pfam
Location: 187058 - 187471 (+)
Gene ID: Rep_1837_c_3_161
Type: TC
Location: 187468 - 189057 (+)
Gene ID: Rep_1837_c_3_162
Type: pfam
Location: 189057 - 189539 (+)
Gene ID: Rep_1837_c_3_163
Type: pfam
Location: 189597 - 190070 (+)
Gene ID: Rep_1837_c_3_164
Type: CAZyme
Location: 190078 - 191241 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1837_c_3_154 vegetarian > vegan 2.36741 0.03116
Rep_1837_c_3_160 vegetarian > vegan 1.76783 0.03116
Rep_1837_c_3_163 vegetarian > vegan 1.96524 0.03116

🧭 Explore Read Mapping of CGC

← Back to Cluster List