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Cluster: Rep_1830_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1830_c_3 Rep_1830_c_3_5 4809 5753 + GT2
pfam Rep_1830_c_3 Rep_1830_c_3_6 5778 6482 + WbqC
pfam Rep_1830_c_3 Rep_1830_c_3_7 6570 7427 + LicD
CAZyme Rep_1830_c_3 Rep_1830_c_3_8 7563 8711 - GT4
CAZyme Rep_1830_c_3 Rep_1830_c_3_9 8836 9543 + GT2
pfam Rep_1830_c_3 Rep_1830_c_3_10 9545 9892 + DUF2304
CAZyme Rep_1830_c_3 Rep_1830_c_3_11 9988 11079 + GT2
CAZyme Rep_1830_c_3 Rep_1830_c_3_12 11079 12119 + GT2
CAZyme Rep_1830_c_3 Rep_1830_c_3_13 12133 14724 + GT2 | GT2
TC Rep_1830_c_3 Rep_1830_c_3_14 14837 15613 + 3.A.1.103.6
TC Rep_1830_c_3 Rep_1830_c_3_15 15626 17455 + 3.A.1.103.5
CAZyme Rep_1830_c_3 Rep_1830_c_3_16 17516 19954 + GT2 | GT2
Gene ID: Rep_1830_c_3_5
Type: CAZyme
Location: 4809 - 5753 (+)
Gene ID: Rep_1830_c_3_6
Type: pfam
Location: 5778 - 6482 (+)
Gene ID: Rep_1830_c_3_7
Type: pfam
Location: 6570 - 7427 (+)
Gene ID: Rep_1830_c_3_8
Type: CAZyme
Location: 7563 - 8711 (-)
Gene ID: Rep_1830_c_3_9
Type: CAZyme
Location: 8836 - 9543 (+)
Gene ID: Rep_1830_c_3_10
Type: pfam
Location: 9545 - 9892 (+)
Gene ID: Rep_1830_c_3_11
Type: CAZyme
Location: 9988 - 11079 (+)
Gene ID: Rep_1830_c_3_12
Type: CAZyme
Location: 11079 - 12119 (+)
Gene ID: Rep_1830_c_3_13
Type: CAZyme
Location: 12133 - 14724 (+)
Gene ID: Rep_1830_c_3_14
Type: TC
Location: 14837 - 15613 (+)
Gene ID: Rep_1830_c_3_15
Type: TC
Location: 15626 - 17455 (+)
Gene ID: Rep_1830_c_3_16
Type: CAZyme
Location: 17516 - 19954 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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