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Cluster: Rep_1816_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1816_c_7 Rep_1816_c_7_22 27564 28322 - 3.A.1.103.1
TC Rep_1816_c_7 Rep_1816_c_7_23 28337 29170 - 3.A.1.103.6
CAZyme Rep_1816_c_7 Rep_1816_c_7_24 29163 30356 - GT2
CAZyme Rep_1816_c_7 Rep_1816_c_7_25 30374 31411 - GT2
pfam Rep_1816_c_7 Rep_1816_c_7_26 31548 32645 + FAD_binding_2 | DAO | Amino_oxidase | GLF | FAD_oxidored | NAD_binding_8
pfam Rep_1816_c_7 Rep_1816_c_7_27 32824 34593 + Amidase_3 | CW_binding_2 | CW_binding_2 | CW_binding_2
CAZyme Rep_1816_c_7 Rep_1816_c_7_28 34612 36543 + GH73
CAZyme Rep_1816_c_7 Rep_1816_c_7_29 36558 37715 + GT4
CAZyme Rep_1816_c_7 Rep_1816_c_7_30 37725 40157 - GT2
Gene ID: Rep_1816_c_7_22
Type: TC
Location: 27564 - 28322 (-)
Gene ID: Rep_1816_c_7_23
Type: TC
Location: 28337 - 29170 (-)
Gene ID: Rep_1816_c_7_24
Type: CAZyme
Location: 29163 - 30356 (-)
Gene ID: Rep_1816_c_7_25
Type: CAZyme
Location: 30374 - 31411 (-)
Gene ID: Rep_1816_c_7_26
Type: pfam
Location: 31548 - 32645 (+)
Gene ID: Rep_1816_c_7_27
Type: pfam
Location: 32824 - 34593 (+)
Gene ID: Rep_1816_c_7_28
Type: CAZyme
Location: 34612 - 36543 (+)
Gene ID: Rep_1816_c_7_29
Type: CAZyme
Location: 36558 - 37715 (+)
Gene ID: Rep_1816_c_7_30
Type: CAZyme
Location: 37725 - 40157 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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