dbCAN Logo

Cluster: Rep_1816_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1816_c_2 Rep_1816_c_2_5 5333 6370 + GT2
pfam Rep_1816_c_2 Rep_1816_c_2_6 6386 7855 + Mur_ligase_C | Mur_ligase_M
pfam Rep_1816_c_2 Rep_1816_c_2_7 7836 9233 + Radical_SAM | Fer4_12
TC Rep_1816_c_2 Rep_1816_c_2_8 9461 10516 + 9.B.157.1.1
TC Rep_1816_c_2 Rep_1816_c_2_9 10548 11408 + 9.B.157.1.3
pfam Rep_1816_c_2 Rep_1816_c_2_10 11410 11922 + MreD
peptidase Rep_1816_c_2 Rep_1816_c_2_11 11945 14068 + X52.001
TC Rep_1816_c_2 Rep_1816_c_2_12 14275 15552 + 2.A.103.1.3
Gene ID: Rep_1816_c_2_5
Type: CAZyme
Location: 5333 - 6370 (+)
Gene ID: Rep_1816_c_2_6
Type: pfam
Location: 6386 - 7855 (+)
Gene ID: Rep_1816_c_2_7
Type: pfam
Location: 7836 - 9233 (+)
Gene ID: Rep_1816_c_2_8
Type: TC
Location: 9461 - 10516 (+)
Gene ID: Rep_1816_c_2_9
Type: TC
Location: 10548 - 11408 (+)
Gene ID: Rep_1816_c_2_10
Type: pfam
Location: 11410 - 11922 (+)
Gene ID: Rep_1816_c_2_11
Type: peptidase
Location: 11945 - 14068 (+)
Gene ID: Rep_1816_c_2_12
Type: TC
Location: 14275 - 15552 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List