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Cluster: Rep_1813_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1813_c_41 Rep_1813_c_41_1 345 785 + 4.A.6.1.10
pfam Rep_1813_c_41 Rep_1813_c_41_2 785 1078 + YajC
TC Rep_1813_c_41 Rep_1813_c_41_3 1138 1620 + 4.A.6.1.4
TC Rep_1813_c_41 Rep_1813_c_41_4 1772 2569 + 4.A.6.1.4
TC Rep_1813_c_41 Rep_1813_c_41_5 2559 3629 + 4.A.6.1.4
TF Rep_1813_c_41 Rep_1813_c_41_6 3755 4483 + GntR
STP Rep_1813_c_41 Rep_1813_c_41_7 4599 5768 + SIS | SIS
CAZyme Rep_1813_c_41 Rep_1813_c_41_8 5895 7064 + CE9
TF Rep_1813_c_41 Rep_1813_c_41_9 7649 8386 + GntR
pfam Rep_1813_c_41 Rep_1813_c_41_10 8404 9243 + F_bP_aldolase
TC Rep_1813_c_41 Rep_1813_c_41_11 9260 9721 + 4.A.5.1.7
TC Rep_1813_c_41 Rep_1813_c_41_12 9775 9945 + 4.A.5.1.4
Gene ID: Rep_1813_c_41_1
Type: TC
Location: 345 - 785 (+)
Gene ID: Rep_1813_c_41_2
Type: pfam
Location: 785 - 1078 (+)
Gene ID: Rep_1813_c_41_3
Type: TC
Location: 1138 - 1620 (+)
Gene ID: Rep_1813_c_41_4
Type: TC
Location: 1772 - 2569 (+)
Gene ID: Rep_1813_c_41_5
Type: TC
Location: 2559 - 3629 (+)
Gene ID: Rep_1813_c_41_6
Type: TF
Location: 3755 - 4483 (+)
Gene ID: Rep_1813_c_41_7
Type: STP
Location: 4599 - 5768 (+)
Gene ID: Rep_1813_c_41_8
Type: CAZyme
Location: 5895 - 7064 (+)
Gene ID: Rep_1813_c_41_9
Type: TF
Location: 7649 - 8386 (+)
Gene ID: Rep_1813_c_41_10
Type: pfam
Location: 8404 - 9243 (+)
Gene ID: Rep_1813_c_41_11
Type: TC
Location: 9260 - 9721 (+)
Gene ID: Rep_1813_c_41_12
Type: TC
Location: 9775 - 9945 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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