Cluster: Rep_1812_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1812
- CGC Family ID: CGCFAM_01111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1812_c_34 | Rep_1812_c_34_11 | 5893 | 7548 | + | 3.A.1.33.1 |
| TC | Rep_1812_c_34 | Rep_1812_c_34_12 | 7541 | 8317 | + | 3.A.1.26.10 |
| pfam | Rep_1812_c_34 | Rep_1812_c_34_13 | 8355 | 9212 | + | PseudoU_synth_1 |
| NULL(UNKNOWN) | Rep_1812_c_34 | Rep_1812_c_34_14 | 9406 | 10170 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1812_c_34 | Rep_1812_c_34_15 | 10262 | 11482 | - | GT2 |
| CAZyme | Rep_1812_c_34 | Rep_1812_c_34_16 | 11574 | 12563 | + | GT2 |
Gene ID: Rep_1812_c_34_11
Type: TC
Location: 5893 - 7548 (+)
Type: TC
Location: 5893 - 7548 (+)
Gene ID: Rep_1812_c_34_12
Type: TC
Location: 7541 - 8317 (+)
Type: TC
Location: 7541 - 8317 (+)
Gene ID: Rep_1812_c_34_13
Type: pfam
Location: 8355 - 9212 (+)
Type: pfam
Location: 8355 - 9212 (+)
Gene ID: Rep_1812_c_34_14
Type:
Location: 9406 - 10170 (+)
Type:
Location: 9406 - 10170 (+)
Gene ID: Rep_1812_c_34_15
Type: CAZyme
Location: 10262 - 11482 (-)
Type: CAZyme
Location: 10262 - 11482 (-)
Gene ID: Rep_1812_c_34_16
Type: CAZyme
Location: 11574 - 12563 (+)
Type: CAZyme
Location: 11574 - 12563 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Lancefieldella
Species
Lancefieldella sp024691995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.