Cluster: Rep_1812_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1812
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1812_c_5 | Rep_1812_c_5_3 | 2011 | 2820 | - | 3.A.1.5.18 |
| pfam | Rep_1812_c_5 | Rep_1812_c_5_4 | 3059 | 4372 | + | tRNA-synt_2b | HGTP_anticodon | tRNA-synt_His |
| STP | Rep_1812_c_5 | Rep_1812_c_5_5 | 4430 | 5320 | + | SIS |
| TC | Rep_1812_c_5 | Rep_1812_c_5_6 | 5512 | 6999 | + | 4.A.1.2.7 |
| CAZyme | Rep_1812_c_5 | Rep_1812_c_5_7 | 7150 | 8214 | + | GH170 |
| NULL(UNKNOWN) | Rep_1812_c_5 | Rep_1812_c_5_8 | 8593 | 9006 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1812_c_5 | Rep_1812_c_5_9 | 9049 | 10473 | - | 2.A.35.1.3 |
Gene ID: Rep_1812_c_5_3
Type: TC
Location: 2011 - 2820 (-)
Type: TC
Location: 2011 - 2820 (-)
Gene ID: Rep_1812_c_5_4
Type: pfam
Location: 3059 - 4372 (+)
Type: pfam
Location: 3059 - 4372 (+)
Gene ID: Rep_1812_c_5_5
Type: STP
Location: 4430 - 5320 (+)
Type: STP
Location: 4430 - 5320 (+)
Gene ID: Rep_1812_c_5_6
Type: TC
Location: 5512 - 6999 (+)
Type: TC
Location: 5512 - 6999 (+)
Gene ID: Rep_1812_c_5_7
Type: CAZyme
Location: 7150 - 8214 (+)
Type: CAZyme
Location: 7150 - 8214 (+)
Gene ID: Rep_1812_c_5_8
Type:
Location: 8593 - 9006 (+)
Type:
Location: 8593 - 9006 (+)
Gene ID: Rep_1812_c_5_9
Type: TC
Location: 9049 - 10473 (-)
Type: TC
Location: 9049 - 10473 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Lancefieldella
Species
Lancefieldella sp024691995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.