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Cluster: Rep_180_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_180_c_284 Rep_180_c_284_13 19180 21201 + 3.A.25.1.1
pfam Rep_180_c_284 Rep_180_c_284_14 21226 22080 + CTP_transf_1
CAZyme Rep_180_c_284 Rep_180_c_284_15 22325 23467 - GT19
pfam Rep_180_c_284 Rep_180_c_284_16 23486 24268 - SurE
TC Rep_180_c_284 Rep_180_c_284_17 24512 25276 + 8.A.3.2.3
pfam Rep_180_c_284 Rep_180_c_284_18 25284 26180 + ParBc | HTH_24 | HTH_ParB | ParB_dimer
pfam Rep_180_c_284 Rep_180_c_284_19 26188 26970 + DUF5683
CAZyme Rep_180_c_284 Rep_180_c_284_20 27040 28380 + GH23
STP Rep_180_c_284 Rep_180_c_284_21 28432 30702 + ACT | HD
CAZyme Rep_180_c_284 Rep_180_c_284_22 30702 31730 + CE8
Gene ID: Rep_180_c_284_13
Type: TC
Location: 19180 - 21201 (+)
Gene ID: Rep_180_c_284_14
Type: pfam
Location: 21226 - 22080 (+)
Gene ID: Rep_180_c_284_15
Type: CAZyme
Location: 22325 - 23467 (-)
Gene ID: Rep_180_c_284_16
Type: pfam
Location: 23486 - 24268 (-)
Gene ID: Rep_180_c_284_17
Type: TC
Location: 24512 - 25276 (+)
Gene ID: Rep_180_c_284_18
Type: pfam
Location: 25284 - 26180 (+)
Gene ID: Rep_180_c_284_19
Type: pfam
Location: 26188 - 26970 (+)
Gene ID: Rep_180_c_284_20
Type: CAZyme
Location: 27040 - 28380 (+)
Gene ID: Rep_180_c_284_21
Type: STP
Location: 28432 - 30702 (+)
Gene ID: Rep_180_c_284_22
Type: CAZyme
Location: 30702 - 31730 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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