Cluster: Rep_1809_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1809
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1809_c_88 | Rep_1809_c_88_15 | 15168 | 16280 | + | 9.B.146.1.6 |
| pfam | Rep_1809_c_88 | Rep_1809_c_88_16 | 16277 | 17716 | + | Mur_ligase_C | Mur_ligase_M |
| TC | Rep_1809_c_88 | Rep_1809_c_88_17 | 17719 | 19065 | + | 2.A.103.1.4 |
| CAZyme | Rep_1809_c_88 | Rep_1809_c_88_18 | 19055 | 20176 | + | GT28 |
Gene ID: Rep_1809_c_88_15
Type: TC
Location: 15168 - 16280 (+)
Type: TC
Location: 15168 - 16280 (+)
Gene ID: Rep_1809_c_88_16
Type: pfam
Location: 16277 - 17716 (+)
Type: pfam
Location: 16277 - 17716 (+)
Gene ID: Rep_1809_c_88_17
Type: TC
Location: 17719 - 19065 (+)
Type: TC
Location: 17719 - 19065 (+)
Gene ID: Rep_1809_c_88_18
Type: CAZyme
Location: 19055 - 20176 (+)
Type: CAZyme
Location: 19055 - 20176 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.