Cluster: Rep_1809_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1809
- CGC Family ID: CGCFAM_00295
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1809_c_70 | Rep_1809_c_70_3 | 5721 | 6968 | + | 3.A.1.1.41 |
| TC | Rep_1809_c_70 | Rep_1809_c_70_4 | 7059 | 7961 | + | 3.A.1.1.36 |
| TC | Rep_1809_c_70 | Rep_1809_c_70_5 | 7969 | 8802 | + | 3.A.1.1.36 |
| CAZyme | Rep_1809_c_70 | Rep_1809_c_70_6 | 8817 | 10610 | + | GH2 |
| TF | Rep_1809_c_70 | Rep_1809_c_70_7 | 10673 | 11620 | + | HTH_5 |
| CAZyme | Rep_1809_c_70 | Rep_1809_c_70_8 | 11936 | 13420 | - | GH32 |
| TC | Rep_1809_c_70 | Rep_1809_c_70_9 | 13432 | 14703 | - | 2.A.1.5.3 |
Gene ID: Rep_1809_c_70_3
Type: TC
Location: 5721 - 6968 (+)
Type: TC
Location: 5721 - 6968 (+)
Gene ID: Rep_1809_c_70_4
Type: TC
Location: 7059 - 7961 (+)
Type: TC
Location: 7059 - 7961 (+)
Gene ID: Rep_1809_c_70_5
Type: TC
Location: 7969 - 8802 (+)
Type: TC
Location: 7969 - 8802 (+)
Gene ID: Rep_1809_c_70_6
Type: CAZyme
Location: 8817 - 10610 (+)
Type: CAZyme
Location: 8817 - 10610 (+)
Gene ID: Rep_1809_c_70_7
Type: TF
Location: 10673 - 11620 (+)
Type: TF
Location: 10673 - 11620 (+)
Gene ID: Rep_1809_c_70_8
Type: CAZyme
Location: 11936 - 13420 (-)
Type: CAZyme
Location: 11936 - 13420 (-)
Gene ID: Rep_1809_c_70_9
Type: TC
Location: 13432 - 14703 (-)
Type: TC
Location: 13432 - 14703 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.