Cluster: Rep_1808_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1808
- CGC Family ID: CGCFAM_00914
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1808_c_163 | Rep_1808_c_163_4 | 3301 | 4104 | + | 2.A.102.2.5 |
| pfam | Rep_1808_c_163 | Rep_1808_c_163_5 | 4101 | 7649 | - | SHIRT | SHIRT |
| TC | Rep_1808_c_163 | Rep_1808_c_163_6 | 8308 | 9960 | - | 2.A.1.1.26 |
| CAZyme | Rep_1808_c_163 | Rep_1808_c_163_7 | 9991 | 11190 | - | GH179 |
Gene ID: Rep_1808_c_163_4
Type: TC
Location: 3301 - 4104 (+)
Type: TC
Location: 3301 - 4104 (+)
Gene ID: Rep_1808_c_163_5
Type: pfam
Location: 4101 - 7649 (-)
Type: pfam
Location: 4101 - 7649 (-)
Gene ID: Rep_1808_c_163_6
Type: TC
Location: 8308 - 9960 (-)
Type: TC
Location: 8308 - 9960 (-)
Gene ID: Rep_1808_c_163_7
Type: CAZyme
Location: 9991 - 11190 (-)
Type: CAZyme
Location: 9991 - 11190 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.