Cluster: Rep_1808_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1808
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1808_c_46 | Rep_1808_c_46_4 | 1944 | 2651 | + | 2.A.77.1.1 |
| pfam | Rep_1808_c_46 | Rep_1808_c_46_5 | 2876 | 4024 | - | ABC2_membrane | ABC2_membrane_3 |
| pfam | Rep_1808_c_46 | Rep_1808_c_46_6 | 4011 | 5270 | - | ABC2_membrane_3 |
| TC | Rep_1808_c_46 | Rep_1808_c_46_7 | 5273 | 6211 | - | 3.A.1.105.9 |
| pfam | Rep_1808_c_46 | Rep_1808_c_46_8 | 6434 | 6919 | + | tRNA_edit |
| TC | Rep_1808_c_46 | Rep_1808_c_46_9 | 7098 | 8363 | + | 2.A.55.3.3 |
| CAZyme | Rep_1808_c_46 | Rep_1808_c_46_10 | 8532 | 10715 | - | CBM48 | GH13_9 |
Gene ID: Rep_1808_c_46_4
Type: TC
Location: 1944 - 2651 (+)
Type: TC
Location: 1944 - 2651 (+)
Gene ID: Rep_1808_c_46_5
Type: pfam
Location: 2876 - 4024 (-)
Type: pfam
Location: 2876 - 4024 (-)
Gene ID: Rep_1808_c_46_6
Type: pfam
Location: 4011 - 5270 (-)
Type: pfam
Location: 4011 - 5270 (-)
Gene ID: Rep_1808_c_46_7
Type: TC
Location: 5273 - 6211 (-)
Type: TC
Location: 5273 - 6211 (-)
Gene ID: Rep_1808_c_46_8
Type: pfam
Location: 6434 - 6919 (+)
Type: pfam
Location: 6434 - 6919 (+)
Gene ID: Rep_1808_c_46_9
Type: TC
Location: 7098 - 8363 (+)
Type: TC
Location: 7098 - 8363 (+)
Gene ID: Rep_1808_c_46_10
Type: CAZyme
Location: 8532 - 10715 (-)
Type: CAZyme
Location: 8532 - 10715 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.