Cluster: Rep_1808_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1808
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1808_c_28 | Rep_1808_c_28_5 | 2413 | 4083 | + | 3.A.1.19.3 |
| TC | Rep_1808_c_28 | Rep_1808_c_28_6 | 4083 | 5093 | + | 3.A.1.19.3 |
| pfam | Rep_1808_c_28 | Rep_1808_c_28_7 | 5054 | 6793 | - | PQQ_2 |
| CAZyme | Rep_1808_c_28 | Rep_1808_c_28_8 | 7086 | 7928 | + | GT81 |
Gene ID: Rep_1808_c_28_5
Type: TC
Location: 2413 - 4083 (+)
Type: TC
Location: 2413 - 4083 (+)
Gene ID: Rep_1808_c_28_6
Type: TC
Location: 4083 - 5093 (+)
Type: TC
Location: 4083 - 5093 (+)
Gene ID: Rep_1808_c_28_7
Type: pfam
Location: 5054 - 6793 (-)
Type: pfam
Location: 5054 - 6793 (-)
Gene ID: Rep_1808_c_28_8
Type: CAZyme
Location: 7086 - 7928 (+)
Type: CAZyme
Location: 7086 - 7928 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.