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Cluster: Rep_1806_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1806_c_11 Rep_1806_c_11_2 1172 2521 + 2.A.1.52.3
pfam Rep_1806_c_11 Rep_1806_c_11_3 2608 3870 - FAD_binding_4 | MurB_C
STP Rep_1806_c_11 Rep_1806_c_11_4 3880 4881 - Sigma70_r4
TC Rep_1806_c_11 Rep_1806_c_11_5 5070 5891 + 1.A.8.2.1
pfam Rep_1806_c_11 Rep_1806_c_11_6 5950 7476 + FGGY_N | FGGY_C
peptidase Rep_1806_c_11 Rep_1806_c_11_7 7692 9050 - U32.UPW
TC Rep_1806_c_11 Rep_1806_c_11_8 9348 10280 - 3.A.1.1.48
TC Rep_1806_c_11 Rep_1806_c_11_9 10273 11280 - 3.A.1.1.48
TC Rep_1806_c_11 Rep_1806_c_11_10 11524 12819 - 3.A.1.1.48
pfam Rep_1806_c_11 Rep_1806_c_11_11 13009 13812 - NTP_transferase | NTP_transf_3
CAZyme Rep_1806_c_11 Rep_1806_c_11_12 14063 15244 + CE9
TF Rep_1806_c_11 Rep_1806_c_11_13 15313 15999 - GerE
pfam Rep_1806_c_11 Rep_1806_c_11_14 15980 17386 - HisKA_3
TC Rep_1806_c_11 Rep_1806_c_11_15 17519 18217 + 3.A.1.122.2
NULL(UNKNOWN) Rep_1806_c_11 Rep_1806_c_11_16 18218 19759 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1806_c_11 Rep_1806_c_11_17 19826 20575 + 3.A.1.125.3
pfam Rep_1806_c_11 Rep_1806_c_11_18 20576 23383 + FtsX | FtsX | MacB_PCD
TC Rep_1806_c_11 Rep_1806_c_11_19 23553 24437 - 9.B.1.1.5
Gene ID: Rep_1806_c_11_2
Type: TC
Location: 1172 - 2521 (+)
Gene ID: Rep_1806_c_11_3
Type: pfam
Location: 2608 - 3870 (-)
Gene ID: Rep_1806_c_11_4
Type: STP
Location: 3880 - 4881 (-)
Gene ID: Rep_1806_c_11_5
Type: TC
Location: 5070 - 5891 (+)
Gene ID: Rep_1806_c_11_6
Type: pfam
Location: 5950 - 7476 (+)
Gene ID: Rep_1806_c_11_7
Type: peptidase
Location: 7692 - 9050 (-)
Gene ID: Rep_1806_c_11_8
Type: TC
Location: 9348 - 10280 (-)
Gene ID: Rep_1806_c_11_9
Type: TC
Location: 10273 - 11280 (-)
Gene ID: Rep_1806_c_11_10
Type: TC
Location: 11524 - 12819 (-)
Gene ID: Rep_1806_c_11_11
Type: pfam
Location: 13009 - 13812 (-)
Gene ID: Rep_1806_c_11_12
Type: CAZyme
Location: 14063 - 15244 (+)
Gene ID: Rep_1806_c_11_13
Type: TF
Location: 15313 - 15999 (-)
Gene ID: Rep_1806_c_11_14
Type: pfam
Location: 15980 - 17386 (-)
Gene ID: Rep_1806_c_11_15
Type: TC
Location: 17519 - 18217 (+)
Gene ID: Rep_1806_c_11_16
Type:
Location: 18218 - 19759 (+)
Gene ID: Rep_1806_c_11_17
Type: TC
Location: 19826 - 20575 (+)
Gene ID: Rep_1806_c_11_18
Type: pfam
Location: 20576 - 23383 (+)
Gene ID: Rep_1806_c_11_19
Type: TC
Location: 23553 - 24437 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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