Cluster: Rep_1806_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1806
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1806_c_14 | Rep_1806_c_14_20 | 30773 | 31945 | + | GT4 |
| pfam | Rep_1806_c_14 | Rep_1806_c_14_21 | 32010 | 33989 | + | DUF6541 |
| CAZyme | Rep_1806_c_14 | Rep_1806_c_14_22 | 34087 | 35328 | + | GT4 |
| TC | Rep_1806_c_14 | Rep_1806_c_14_23 | 35431 | 36717 | - | 2.A.66.2.15 |
| pfam | Rep_1806_c_14 | Rep_1806_c_14_24 | 36798 | 37865 | - | Epimerase_2 |
| CAZyme | Rep_1806_c_14 | Rep_1806_c_14_25 | 38015 | 39169 | - | GT4 |
Gene ID: Rep_1806_c_14_20
Type: CAZyme
Location: 30773 - 31945 (+)
Type: CAZyme
Location: 30773 - 31945 (+)
Gene ID: Rep_1806_c_14_21
Type: pfam
Location: 32010 - 33989 (+)
Type: pfam
Location: 32010 - 33989 (+)
Gene ID: Rep_1806_c_14_22
Type: CAZyme
Location: 34087 - 35328 (+)
Type: CAZyme
Location: 34087 - 35328 (+)
Gene ID: Rep_1806_c_14_23
Type: TC
Location: 35431 - 36717 (-)
Type: TC
Location: 35431 - 36717 (-)
Gene ID: Rep_1806_c_14_24
Type: pfam
Location: 36798 - 37865 (-)
Type: pfam
Location: 36798 - 37865 (-)
Gene ID: Rep_1806_c_14_25
Type: CAZyme
Location: 38015 - 39169 (-)
Type: CAZyme
Location: 38015 - 39169 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum sp902489465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.