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Cluster: Rep_1802_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1802_c_11 Rep_1802_c_11_1 182 805 - 9.B.18.1.3
pfam Rep_1802_c_11 Rep_1802_c_11_2 805 2022 - Aminotran_1_2 | DegT_DnrJ_EryC1
TC Rep_1802_c_11 Rep_1802_c_11_3 2130 3968 + 9.B.18.2.1
pfam Rep_1802_c_11 Rep_1802_c_11_4 4086 5012 + LicD
CAZyme Rep_1802_c_11 Rep_1802_c_11_5 5027 6016 + GT2
TC Rep_1802_c_11 Rep_1802_c_11_6 6035 7420 - 2.A.66.2.1
CAZyme Rep_1802_c_11 Rep_1802_c_11_7 7617 8618 - GT2
pfam Rep_1802_c_11 Rep_1802_c_11_8 8733 10277 + Wzy_C
pfam Rep_1802_c_11 Rep_1802_c_11_9 10509 11204 - DUF1919
CAZyme Rep_1802_c_11 Rep_1802_c_11_10 11201 12253 - GT2
Gene ID: Rep_1802_c_11_1
Type: TC
Location: 182 - 805 (-)
Gene ID: Rep_1802_c_11_2
Type: pfam
Location: 805 - 2022 (-)
Gene ID: Rep_1802_c_11_3
Type: TC
Location: 2130 - 3968 (+)
Gene ID: Rep_1802_c_11_4
Type: pfam
Location: 4086 - 5012 (+)
Gene ID: Rep_1802_c_11_5
Type: CAZyme
Location: 5027 - 6016 (+)
Gene ID: Rep_1802_c_11_6
Type: TC
Location: 6035 - 7420 (-)
Gene ID: Rep_1802_c_11_7
Type: CAZyme
Location: 7617 - 8618 (-)
Gene ID: Rep_1802_c_11_8
Type: pfam
Location: 8733 - 10277 (+)
Gene ID: Rep_1802_c_11_9
Type: pfam
Location: 10509 - 11204 (-)
Gene ID: Rep_1802_c_11_10
Type: CAZyme
Location: 11201 - 12253 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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