Cluster: Rep_1802_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1802
- CGC Family ID: CGCFAM_01163
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1802_c_126 | Rep_1802_c_126_35 | 34464 | 35366 | - | 3.A.1.1.36 |
| TC | Rep_1802_c_126 | Rep_1802_c_126_36 | 35363 | 36442 | - | 3.A.1.1.36 |
| CAZyme | Rep_1802_c_126 | Rep_1802_c_126_37 | 36439 | 38046 | - | GH2 |
| pfam | Rep_1802_c_126 | Rep_1802_c_126_38 | 38594 | 38692 | - | COX24_C |
| pfam | Rep_1802_c_126 | Rep_1802_c_126_39 | 38784 | 38999 | - | HTH_17 |
| TC | Rep_1802_c_126 | Rep_1802_c_126_40 | 39343 | 40719 | + | 2.A.38.4.3 |
| TC | Rep_1802_c_126 | Rep_1802_c_126_41 | 40829 | 41497 | - | 2.A.38.4.4 |
Gene ID: Rep_1802_c_126_35
Type: TC
Location: 34464 - 35366 (-)
Type: TC
Location: 34464 - 35366 (-)
Gene ID: Rep_1802_c_126_36
Type: TC
Location: 35363 - 36442 (-)
Type: TC
Location: 35363 - 36442 (-)
Gene ID: Rep_1802_c_126_37
Type: CAZyme
Location: 36439 - 38046 (-)
Type: CAZyme
Location: 36439 - 38046 (-)
Gene ID: Rep_1802_c_126_38
Type: pfam
Location: 38594 - 38692 (-)
Type: pfam
Location: 38594 - 38692 (-)
Gene ID: Rep_1802_c_126_39
Type: pfam
Location: 38784 - 38999 (-)
Type: pfam
Location: 38784 - 38999 (-)
Gene ID: Rep_1802_c_126_40
Type: TC
Location: 39343 - 40719 (+)
Type: TC
Location: 39343 - 40719 (+)
Gene ID: Rep_1802_c_126_41
Type: TC
Location: 40829 - 41497 (-)
Type: TC
Location: 40829 - 41497 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum massiliense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.