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Cluster: Rep_1802_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1802_c_102 Rep_1802_c_102_1 1 1341 + 2.A.1.4.3
STP Rep_1802_c_102 Rep_1802_c_102_2 1440 2441 + SBP_bac_1
pfam Rep_1802_c_102 Rep_1802_c_102_3 2441 3937 + BPD_transp_1
TC Rep_1802_c_102 Rep_1802_c_102_4 3919 4995 + 3.A.1.11.5
TC Rep_1802_c_102 Rep_1802_c_102_5 5155 6720 + 2.A.25.1.5
TC Rep_1802_c_102 Rep_1802_c_102_6 6739 8733 - 2.A.40.3.2
pfam Rep_1802_c_102 Rep_1802_c_102_7 9012 11129 + Transketolase_N | Transket_pyr | Transketolase_C | Transketolase_C_1
pfam Rep_1802_c_102 Rep_1802_c_102_8 11254 11616 + RbpA
CAZyme Rep_1802_c_102 Rep_1802_c_102_9 11711 12448 - GT2
Gene ID: Rep_1802_c_102_1
Type: TC
Location: 1 - 1341 (+)
Gene ID: Rep_1802_c_102_2
Type: STP
Location: 1440 - 2441 (+)
Gene ID: Rep_1802_c_102_3
Type: pfam
Location: 2441 - 3937 (+)
Gene ID: Rep_1802_c_102_4
Type: TC
Location: 3919 - 4995 (+)
Gene ID: Rep_1802_c_102_5
Type: TC
Location: 5155 - 6720 (+)
Gene ID: Rep_1802_c_102_6
Type: TC
Location: 6739 - 8733 (-)
Gene ID: Rep_1802_c_102_7
Type: pfam
Location: 9012 - 11129 (+)
Gene ID: Rep_1802_c_102_8
Type: pfam
Location: 11254 - 11616 (+)
Gene ID: Rep_1802_c_102_9
Type: CAZyme
Location: 11711 - 12448 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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