Cluster: Rep_1802_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1802
- CGC Family ID: CGCFAM_01129
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1802_c_89 | Rep_1802_c_89_1 | 332 | 1282 | + | 2.A.7.3.47 |
| STP | Rep_1802_c_89 | Rep_1802_c_89_2 | 1528 | 2652 | + | SBP_bac_1 |
| TC | Rep_1802_c_89 | Rep_1802_c_89_3 | 2659 | 3609 | + | 3.A.1.1.34 |
| TC | Rep_1802_c_89 | Rep_1802_c_89_4 | 3599 | 4543 | + | 3.A.1.1.36 |
| CAZyme | Rep_1802_c_89 | Rep_1802_c_89_5 | 4548 | 6212 | + | GH63 |
| CAZyme | Rep_1802_c_89 | Rep_1802_c_89_6 | 6205 | 9540 | + | GH2 |
Gene ID: Rep_1802_c_89_1
Type: TC
Location: 332 - 1282 (+)
Type: TC
Location: 332 - 1282 (+)
Gene ID: Rep_1802_c_89_2
Type: STP
Location: 1528 - 2652 (+)
Type: STP
Location: 1528 - 2652 (+)
Gene ID: Rep_1802_c_89_3
Type: TC
Location: 2659 - 3609 (+)
Type: TC
Location: 2659 - 3609 (+)
Gene ID: Rep_1802_c_89_4
Type: TC
Location: 3599 - 4543 (+)
Type: TC
Location: 3599 - 4543 (+)
Gene ID: Rep_1802_c_89_5
Type: CAZyme
Location: 4548 - 6212 (+)
Type: CAZyme
Location: 4548 - 6212 (+)
Gene ID: Rep_1802_c_89_6
Type: CAZyme
Location: 6205 - 9540 (+)
Type: CAZyme
Location: 6205 - 9540 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum massiliense
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.