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Cluster: Rep_1795_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1795_c_5 Rep_1795_c_5_26 20828 21733 + GH25
pfam Rep_1795_c_5 Rep_1795_c_5_27 21730 21960 + Phage_holin_Dp1
NULL(UNKNOWN) Rep_1795_c_5 Rep_1795_c_5_28 23311 23634 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1795_c_5 Rep_1795_c_5_29 23621 25564 + 3.A.2.2.2
TC Rep_1795_c_5 Rep_1795_c_5_30 25598 26068 + 3.A.2.2.2
NULL(UNKNOWN) Rep_1795_c_5 Rep_1795_c_5_31 26095 26649 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1795_c_5 Rep_1795_c_5_32 26649 27713 + vATP-synt_AC39
TC Rep_1795_c_5 Rep_1795_c_5_33 27706 28014 + 3.A.2.2.2
TC Rep_1795_c_5 Rep_1795_c_5_34 28028 29803 + 3.A.2.2.2
TC Rep_1795_c_5 Rep_1795_c_5_35 29796 31286 + 3.A.2.2.2
TC Rep_1795_c_5 Rep_1795_c_5_36 31283 31975 + 3.A.2.2.2
Gene ID: Rep_1795_c_5_26
Type: CAZyme
Location: 20828 - 21733 (+)
Gene ID: Rep_1795_c_5_27
Type: pfam
Location: 21730 - 21960 (+)
Gene ID: Rep_1795_c_5_28
Type:
Location: 23311 - 23634 (+)
Gene ID: Rep_1795_c_5_29
Type: TC
Location: 23621 - 25564 (+)
Gene ID: Rep_1795_c_5_30
Type: TC
Location: 25598 - 26068 (+)
Gene ID: Rep_1795_c_5_31
Type:
Location: 26095 - 26649 (+)
Gene ID: Rep_1795_c_5_32
Type: pfam
Location: 26649 - 27713 (+)
Gene ID: Rep_1795_c_5_33
Type: TC
Location: 27706 - 28014 (+)
Gene ID: Rep_1795_c_5_34
Type: TC
Location: 28028 - 29803 (+)
Gene ID: Rep_1795_c_5_35
Type: TC
Location: 29796 - 31286 (+)
Gene ID: Rep_1795_c_5_36
Type: TC
Location: 31283 - 31975 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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