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Cluster: Rep_1795_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1795_c_4 Rep_1795_c_4_32 38328 39782 + GT5
CAZyme Rep_1795_c_4 Rep_1795_c_4_33 39779 41740 + GH13_14
pfam Rep_1795_c_4 Rep_1795_c_4_34 41773 43500 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
STP Rep_1795_c_4 Rep_1795_c_4_35 43637 44143 + FHA
TC Rep_1795_c_4 Rep_1795_c_4_36 44133 45416 + 2.A.103.1.7
pfam Rep_1795_c_4 Rep_1795_c_4_37 45403 46797 + Transpeptidase | PBP_dimer_2
TC Rep_1795_c_4 Rep_1795_c_4_38 46868 48328 - 2.A.38.1.6
TC Rep_1795_c_4 Rep_1795_c_4_39 48325 49686 - 2.A.38.1.1
Gene ID: Rep_1795_c_4_32
Type: CAZyme
Location: 38328 - 39782 (+)
Gene ID: Rep_1795_c_4_33
Type: CAZyme
Location: 39779 - 41740 (+)
Gene ID: Rep_1795_c_4_34
Type: pfam
Location: 41773 - 43500 (+)
Gene ID: Rep_1795_c_4_35
Type: STP
Location: 43637 - 44143 (+)
Gene ID: Rep_1795_c_4_36
Type: TC
Location: 44133 - 45416 (+)
Gene ID: Rep_1795_c_4_37
Type: pfam
Location: 45403 - 46797 (+)
Gene ID: Rep_1795_c_4_38
Type: TC
Location: 46868 - 48328 (-)
Gene ID: Rep_1795_c_4_39
Type: TC
Location: 48325 - 49686 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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