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Cluster: Rep_1794_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1794_c_25 Rep_1794_c_25_75 89433 90887 + GT5
CAZyme Rep_1794_c_25 Rep_1794_c_25_76 90884 92845 + GH13_14
pfam Rep_1794_c_25 Rep_1794_c_25_77 92908 94602 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
STP Rep_1794_c_25 Rep_1794_c_25_78 94733 95239 + FHA
TC Rep_1794_c_25 Rep_1794_c_25_79 95268 96512 + 2.A.103.1.7
pfam Rep_1794_c_25 Rep_1794_c_25_80 96499 97893 + Transpeptidase | PBP_dimer_2
TC Rep_1794_c_25 Rep_1794_c_25_81 97953 99416 - 2.A.38.1.6
TC Rep_1794_c_25 Rep_1794_c_25_82 99413 100774 - 2.A.38.1.1
Gene ID: Rep_1794_c_25_75
Type: CAZyme
Location: 89433 - 90887 (+)
Gene ID: Rep_1794_c_25_76
Type: CAZyme
Location: 90884 - 92845 (+)
Gene ID: Rep_1794_c_25_77
Type: pfam
Location: 92908 - 94602 (+)
Gene ID: Rep_1794_c_25_78
Type: STP
Location: 94733 - 95239 (+)
Gene ID: Rep_1794_c_25_79
Type: TC
Location: 95268 - 96512 (+)
Gene ID: Rep_1794_c_25_80
Type: pfam
Location: 96499 - 97893 (+)
Gene ID: Rep_1794_c_25_81
Type: TC
Location: 97953 - 99416 (-)
Gene ID: Rep_1794_c_25_82
Type: TC
Location: 99413 - 100774 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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