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Cluster: Rep_1793_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1793_c_20 Rep_1793_c_20_23 19497 20855 + 2.A.38.1.1
TC Rep_1793_c_20 Rep_1793_c_20_24 20855 22318 + 2.A.38.1.1
NULL(UNKNOWN) Rep_1793_c_20 Rep_1793_c_20_25 22464 22850 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1793_c_20 Rep_1793_c_20_26 22940 24325 - Transpeptidase | PBP_dimer_2
TC Rep_1793_c_20 Rep_1793_c_20_27 24312 25595 - 2.A.103.1.7
STP Rep_1793_c_20 Rep_1793_c_20_28 25585 26091 - FHA
pfam Rep_1793_c_20 Rep_1793_c_20_29 26291 27985 - PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme Rep_1793_c_20 Rep_1793_c_20_30 28032 29999 - GH13_14
CAZyme Rep_1793_c_20 Rep_1793_c_20_31 29996 31432 - GT5
Gene ID: Rep_1793_c_20_23
Type: TC
Location: 19497 - 20855 (+)
Gene ID: Rep_1793_c_20_24
Type: TC
Location: 20855 - 22318 (+)
Gene ID: Rep_1793_c_20_25
Type:
Location: 22464 - 22850 (-)
Gene ID: Rep_1793_c_20_26
Type: pfam
Location: 22940 - 24325 (-)
Gene ID: Rep_1793_c_20_27
Type: TC
Location: 24312 - 25595 (-)
Gene ID: Rep_1793_c_20_28
Type: STP
Location: 25585 - 26091 (-)
Gene ID: Rep_1793_c_20_29
Type: pfam
Location: 26291 - 27985 (-)
Gene ID: Rep_1793_c_20_30
Type: CAZyme
Location: 28032 - 29999 (-)
Gene ID: Rep_1793_c_20_31
Type: CAZyme
Location: 29996 - 31432 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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