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Cluster: Rep_1776_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1776_c_139 Rep_1776_c_139_12 11140 12927 - 3.A.1.106.1
CAZyme Rep_1776_c_139 Rep_1776_c_139_13 12928 14814 - GT111 | GT8
pfam Rep_1776_c_139 Rep_1776_c_139_14 14965 15954 - HMGL-like
CAZyme Rep_1776_c_139 Rep_1776_c_139_15 16065 17186 - GT8
TC Rep_1776_c_139 Rep_1776_c_139_16 17230 18639 - 2.A.50.2.1
pfam Rep_1776_c_139 Rep_1776_c_139_17 18639 20396 - DHHW | ALGX
pfam Rep_1776_c_139 Rep_1776_c_139_18 20437 21735 - UDPG_MGDP_dh | ApbA | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme Rep_1776_c_139 Rep_1776_c_139_19 21781 23886 - GT8 | GT8
Gene ID: Rep_1776_c_139_12
Type: TC
Location: 11140 - 12927 (-)
Gene ID: Rep_1776_c_139_13
Type: CAZyme
Location: 12928 - 14814 (-)
Gene ID: Rep_1776_c_139_14
Type: pfam
Location: 14965 - 15954 (-)
Gene ID: Rep_1776_c_139_15
Type: CAZyme
Location: 16065 - 17186 (-)
Gene ID: Rep_1776_c_139_16
Type: TC
Location: 17230 - 18639 (-)
Gene ID: Rep_1776_c_139_17
Type: pfam
Location: 18639 - 20396 (-)
Gene ID: Rep_1776_c_139_18
Type: pfam
Location: 20437 - 21735 (-)
Gene ID: Rep_1776_c_139_19
Type: CAZyme
Location: 21781 - 23886 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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