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Cluster: Rep_170_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_170_c_138 Rep_170_c_138_2 1144 2307 - 2.A.1.7.17
CAZyme Rep_170_c_138 Rep_170_c_138_3 2388 4160 - GH32
CAZyme Rep_170_c_138 Rep_170_c_138_4 4229 5827 - GH32
pfam Rep_170_c_138 Rep_170_c_138_5 5848 7239 - DUF4960 | DUF5018
pfam Rep_170_c_138 Rep_170_c_138_6 7233 8966 - SusD_RagB | SusD-like_3
TC Rep_170_c_138 Rep_170_c_138_7 8979 12080 - 1.B.14.6.1
NULL(UNKNOWN) Rep_170_c_138 Rep_170_c_138_8 12391 13347 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_170_c_138 Rep_170_c_138_9 13400 13582 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_170_c_138 Rep_170_c_138_10 13593 16673 - GH32
Gene ID: Rep_170_c_138_2
Type: TC
Location: 1144 - 2307 (-)
Gene ID: Rep_170_c_138_3
Type: CAZyme
Location: 2388 - 4160 (-)
Gene ID: Rep_170_c_138_4
Type: CAZyme
Location: 4229 - 5827 (-)
Gene ID: Rep_170_c_138_5
Type: pfam
Location: 5848 - 7239 (-)
Gene ID: Rep_170_c_138_6
Type: pfam
Location: 7233 - 8966 (-)
Gene ID: Rep_170_c_138_7
Type: TC
Location: 8979 - 12080 (-)
Gene ID: Rep_170_c_138_8
Type:
Location: 12391 - 13347 (-)
Gene ID: Rep_170_c_138_9
Type:
Location: 13400 - 13582 (-)
Gene ID: Rep_170_c_138_10
Type: CAZyme
Location: 13593 - 16673 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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