Cluster: Rep_170_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_170
- CGC Family ID: CGCFAM_00048
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_170_c_98 | Rep_170_c_98_4 | 2456 | 3412 | - | CE8 |
| STP | Rep_170_c_98 | Rep_170_c_98_5 | 3445 | 5724 | - | HD |
| CAZyme | Rep_170_c_98 | Rep_170_c_98_6 | 5750 | 7102 | - | GH23 |
| pfam | Rep_170_c_98 | Rep_170_c_98_7 | 7139 | 7888 | - | DUF5683 |
| pfam | Rep_170_c_98 | Rep_170_c_98_8 | 7947 | 8840 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | Rep_170_c_98 | Rep_170_c_98_9 | 8867 | 9628 | - | 8.A.3.2.3 |
| pfam | Rep_170_c_98 | Rep_170_c_98_10 | 9725 | 10552 | + | SurE |
| CAZyme | Rep_170_c_98 | Rep_170_c_98_11 | 10580 | 11734 | + | GT19 |
| TC | Rep_170_c_98 | Rep_170_c_98_12 | 11721 | 12464 | - | 2.A.115.2.10 |
| CAZyme | Rep_170_c_98 | Rep_170_c_98_13 | 12538 | 13491 | - | GH5_2 |
| pfam | Rep_170_c_98 | Rep_170_c_98_14 | 13558 | 14415 | - | CTP_transf_1 |
| TC | Rep_170_c_98 | Rep_170_c_98_15 | 14412 | 16418 | - | 3.A.16.1.2 |
Gene ID: Rep_170_c_98_4
Type: CAZyme
Location: 2456 - 3412 (-)
Type: CAZyme
Location: 2456 - 3412 (-)
Gene ID: Rep_170_c_98_5
Type: STP
Location: 3445 - 5724 (-)
Type: STP
Location: 3445 - 5724 (-)
Gene ID: Rep_170_c_98_6
Type: CAZyme
Location: 5750 - 7102 (-)
Type: CAZyme
Location: 5750 - 7102 (-)
Gene ID: Rep_170_c_98_7
Type: pfam
Location: 7139 - 7888 (-)
Type: pfam
Location: 7139 - 7888 (-)
Gene ID: Rep_170_c_98_8
Type: pfam
Location: 7947 - 8840 (-)
Type: pfam
Location: 7947 - 8840 (-)
Gene ID: Rep_170_c_98_9
Type: TC
Location: 8867 - 9628 (-)
Type: TC
Location: 8867 - 9628 (-)
Gene ID: Rep_170_c_98_10
Type: pfam
Location: 9725 - 10552 (+)
Type: pfam
Location: 9725 - 10552 (+)
Gene ID: Rep_170_c_98_11
Type: CAZyme
Location: 10580 - 11734 (+)
Type: CAZyme
Location: 10580 - 11734 (+)
Gene ID: Rep_170_c_98_12
Type: TC
Location: 11721 - 12464 (-)
Type: TC
Location: 11721 - 12464 (-)
Gene ID: Rep_170_c_98_13
Type: CAZyme
Location: 12538 - 13491 (-)
Type: CAZyme
Location: 12538 - 13491 (-)
Gene ID: Rep_170_c_98_14
Type: pfam
Location: 13558 - 14415 (-)
Type: pfam
Location: 13558 - 14415 (-)
Gene ID: Rep_170_c_98_15
Type: TC
Location: 14412 - 16418 (-)
Type: TC
Location: 14412 - 16418 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.