Cluster: Rep_1702_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_1702
- CGC Family ID: CGCFAM_00037
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1702_c_159 | Rep_1702_c_159_3 | 1838 | 3019 | - | 3.A.1.1.22 |
| TC | Rep_1702_c_159 | Rep_1702_c_159_4 | 3036 | 3887 | - | 3.A.1.1.6 |
| TC | Rep_1702_c_159 | Rep_1702_c_159_5 | 3884 | 5212 | - | 3.A.1.1.27 |
| pfam | Rep_1702_c_159 | Rep_1702_c_159_6 | 5224 | 6156 | - | SBP_bac_8 |
| NULL(UNKNOWN) | Rep_1702_c_159 | Rep_1702_c_159_7 | 6153 | 6638 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1702_c_159 | Rep_1702_c_159_8 | 6635 | 8326 | - | CBM34 | GH13_20 |
Gene ID: Rep_1702_c_159_3
Type: TC
Location: 1838 - 3019 (-)
Type: TC
Location: 1838 - 3019 (-)
Gene ID: Rep_1702_c_159_4
Type: TC
Location: 3036 - 3887 (-)
Type: TC
Location: 3036 - 3887 (-)
Gene ID: Rep_1702_c_159_5
Type: TC
Location: 3884 - 5212 (-)
Type: TC
Location: 3884 - 5212 (-)
Gene ID: Rep_1702_c_159_6
Type: pfam
Location: 5224 - 6156 (-)
Type: pfam
Location: 5224 - 6156 (-)
Gene ID: Rep_1702_c_159_7
Type:
Location: 6153 - 6638 (-)
Type:
Location: 6153 - 6638 (-)
Gene ID: Rep_1702_c_159_8
Type: CAZyme
Location: 6635 - 8326 (-)
Type: CAZyme
Location: 6635 - 8326 (-)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.