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Cluster: Rep_1701_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1701_c_13 Rep_1701_c_13_40 46836 48008 - GH32
pfam Rep_1701_c_13 Rep_1701_c_13_41 48001 49521 - FGGY_N | FGGY_C
pfam Rep_1701_c_13 Rep_1701_c_13_42 49523 50785 - Glyco_hydro_32N
CAZyme Rep_1701_c_13 Rep_1701_c_13_43 50793 52157 - GH32
TF Rep_1701_c_13 Rep_1701_c_13_44 52256 53227 + LacI
TC Rep_1701_c_13 Rep_1701_c_13_45 53464 54447 - 3.A.1.5.27
TC Rep_1701_c_13 Rep_1701_c_13_46 54457 55443 - 3.A.1.5.13
TC Rep_1701_c_13 Rep_1701_c_13_47 55445 56359 - 3.A.1.5.9
TC Rep_1701_c_13 Rep_1701_c_13_48 56361 57431 - 3.A.1.5.9
Gene ID: Rep_1701_c_13_40
Type: CAZyme
Location: 46836 - 48008 (-)
Gene ID: Rep_1701_c_13_41
Type: pfam
Location: 48001 - 49521 (-)
Gene ID: Rep_1701_c_13_42
Type: pfam
Location: 49523 - 50785 (-)
Gene ID: Rep_1701_c_13_43
Type: CAZyme
Location: 50793 - 52157 (-)
Gene ID: Rep_1701_c_13_44
Type: TF
Location: 52256 - 53227 (+)
Gene ID: Rep_1701_c_13_45
Type: TC
Location: 53464 - 54447 (-)
Gene ID: Rep_1701_c_13_46
Type: TC
Location: 54457 - 55443 (-)
Gene ID: Rep_1701_c_13_47
Type: TC
Location: 55445 - 56359 (-)
Gene ID: Rep_1701_c_13_48
Type: TC
Location: 56361 - 57431 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RFN20
→
Family
CAG-826
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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