Cluster: Rep_1701_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1701
- CGC Family ID: CGCFAM_00006
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1701_c_9 | Rep_1701_c_9_48 | 48300 | 48992 | + | 9.B.18.1.2 |
| CAZyme | Rep_1701_c_9 | Rep_1701_c_9_49 | 49136 | 50275 | + | GT4 |
| pfam | Rep_1701_c_9 | Rep_1701_c_9_50 | 50272 | 50823 | + | Hexapep | Hexapep_2 |
| CAZyme | Rep_1701_c_9 | Rep_1701_c_9_51 | 50820 | 51872 | + | GT4 |
| NULL(UNKNOWN) | Rep_1701_c_9 | Rep_1701_c_9_52 | 51918 | 54677 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1701_c_9 | Rep_1701_c_9_53 | 54674 | 55693 | + | 9.B.18.2.1 |
Gene ID: Rep_1701_c_9_48
Type: TC
Location: 48300 - 48992 (+)
Type: TC
Location: 48300 - 48992 (+)
Gene ID: Rep_1701_c_9_49
Type: CAZyme
Location: 49136 - 50275 (+)
Type: CAZyme
Location: 49136 - 50275 (+)
Gene ID: Rep_1701_c_9_50
Type: pfam
Location: 50272 - 50823 (+)
Type: pfam
Location: 50272 - 50823 (+)
Gene ID: Rep_1701_c_9_51
Type: CAZyme
Location: 50820 - 51872 (+)
Type: CAZyme
Location: 50820 - 51872 (+)
Gene ID: Rep_1701_c_9_52
Type:
Location: 51918 - 54677 (+)
Type:
Location: 51918 - 54677 (+)
Gene ID: Rep_1701_c_9_53
Type: TC
Location: 54674 - 55693 (+)
Type: TC
Location: 54674 - 55693 (+)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.