Cluster: Rep_1701_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1701
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1701_c_21 | Rep_1701_c_21_24 | 23317 | 24051 | - | 3.A.1.211.5 |
| TF | Rep_1701_c_21 | Rep_1701_c_21_25 | 24035 | 24244 | - | SpoVT_AbrB |
| CAZyme | Rep_1701_c_21 | Rep_1701_c_21_26 | 24970 | 27636 | - | GH13_36 |
| pfam | Rep_1701_c_21 | Rep_1701_c_21_27 | 27653 | 28678 | - | Flg_new |
| pfam | Rep_1701_c_21 | Rep_1701_c_21_28 | 28692 | 30314 | - | Flg_new | CBM26 |
| CAZyme | Rep_1701_c_21 | Rep_1701_c_21_29 | 30316 | 33225 | - | CBM41 | GH13_14 |
Gene ID: Rep_1701_c_21_24
Type: TC
Location: 23317 - 24051 (-)
Type: TC
Location: 23317 - 24051 (-)
Gene ID: Rep_1701_c_21_25
Type: TF
Location: 24035 - 24244 (-)
Type: TF
Location: 24035 - 24244 (-)
Gene ID: Rep_1701_c_21_26
Type: CAZyme
Location: 24970 - 27636 (-)
Type: CAZyme
Location: 24970 - 27636 (-)
Gene ID: Rep_1701_c_21_27
Type: pfam
Location: 27653 - 28678 (-)
Type: pfam
Location: 27653 - 28678 (-)
Gene ID: Rep_1701_c_21_28
Type: pfam
Location: 28692 - 30314 (-)
Type: pfam
Location: 28692 - 30314 (-)
Gene ID: Rep_1701_c_21_29
Type: CAZyme
Location: 30316 - 33225 (-)
Type: CAZyme
Location: 30316 - 33225 (-)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.