Cluster: Rep_1701_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1701
- CGC Family ID: CGCFAM_02004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1701_c_17 | Rep_1701_c_17_108 | 108493 | 109737 | + | 3.A.1.1.27 |
| TC | Rep_1701_c_17 | Rep_1701_c_17_109 | 109819 | 111564 | + | 3.A.1.1.27 |
| TC | Rep_1701_c_17 | Rep_1701_c_17_110 | 111566 | 112504 | + | 3.A.1.1.27 |
| CAZyme | Rep_1701_c_17 | Rep_1701_c_17_111 | 112511 | 114064 | + | GH13_44 |
| CAZyme | Rep_1701_c_17 | Rep_1701_c_17_112 | 114061 | 115731 | + | GH13_36 |
| TC | Rep_1701_c_17 | Rep_1701_c_17_113 | 115745 | 117640 | + | 3.A.1.1.26 |
Gene ID: Rep_1701_c_17_108
Type: TC
Location: 108493 - 109737 (+)
Type: TC
Location: 108493 - 109737 (+)
Gene ID: Rep_1701_c_17_109
Type: TC
Location: 109819 - 111564 (+)
Type: TC
Location: 109819 - 111564 (+)
Gene ID: Rep_1701_c_17_110
Type: TC
Location: 111566 - 112504 (+)
Type: TC
Location: 111566 - 112504 (+)
Gene ID: Rep_1701_c_17_111
Type: CAZyme
Location: 112511 - 114064 (+)
Type: CAZyme
Location: 112511 - 114064 (+)
Gene ID: Rep_1701_c_17_112
Type: CAZyme
Location: 114061 - 115731 (+)
Type: CAZyme
Location: 114061 - 115731 (+)
Gene ID: Rep_1701_c_17_113
Type: TC
Location: 115745 - 117640 (+)
Type: TC
Location: 115745 - 117640 (+)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.