Cluster: Rep_169_CGC25
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 10
- Substrate: pectin
- Genome ID: Rep_169
- CGC Family ID: CGCFAM_01075
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_169_c_194 | Rep_169_c_194_4 | 3727 | 5574 | + | GH5_5 |
| pfam | Rep_169_c_194 | Rep_169_c_194_5 | 5669 | 6409 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | Rep_169_c_194 | Rep_169_c_194_6 | 6417 | 9665 | + | 1.B.14.6.1 |
| pfam | Rep_169_c_194 | Rep_169_c_194_7 | 9699 | 11501 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_169_c_194 | Rep_169_c_194_8 | 11543 | 12739 | + | SGBP_B_XBD |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_9 | 12746 | 13858 | + | GH5_5 |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_10 | 13855 | 14823 | + | GH5_2 |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_11 | 15057 | 17597 | + | GH2 |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_12 | 17602 | 18612 | + | GH5_5 |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_13 | 18662 | 20002 | + | GH140 |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_14 | 20016 | 21188 | + | GH130_1 |
| TC | Rep_169_c_194 | Rep_169_c_194_15 | 21192 | 22565 | + | 2.A.2.3.6 |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_16 | 22562 | 25147 | + | CBM67 | GH78 |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_17 | 25144 | 27075 | + | CE20 | CE20 |
| pfam | Rep_169_c_194 | Rep_169_c_194_18 | 27164 | 28138 | + | PMI_typeI_cat |
| CAZyme | Rep_169_c_194 | Rep_169_c_194_19 | 28162 | 30126 | + | GH172 |
| pfam | Rep_169_c_194 | Rep_169_c_194_20 | 30735 | 31625 | + | PorP_SprF |
| TC | Rep_169_c_194 | Rep_169_c_194_21 | 31631 | 33088 | + | 9.A.25.1.1 |
| pfam | Rep_169_c_194 | Rep_169_c_194_22 | 33085 | 33855 | + | GldL_N |
| TC | Rep_169_c_194 | Rep_169_c_194_23 | 33868 | 35418 | + | 9.A.25.1.1 |
Gene ID: Rep_169_c_194_4
Type: CAZyme
Location: 3727 - 5574 (+)
Type: CAZyme
Location: 3727 - 5574 (+)
Gene ID: Rep_169_c_194_5
Type: pfam
Location: 5669 - 6409 (+)
Type: pfam
Location: 5669 - 6409 (+)
Gene ID: Rep_169_c_194_6
Type: TC
Location: 6417 - 9665 (+)
Type: TC
Location: 6417 - 9665 (+)
Gene ID: Rep_169_c_194_7
Type: pfam
Location: 9699 - 11501 (+)
Type: pfam
Location: 9699 - 11501 (+)
Gene ID: Rep_169_c_194_8
Type: pfam
Location: 11543 - 12739 (+)
Type: pfam
Location: 11543 - 12739 (+)
Gene ID: Rep_169_c_194_9
Type: CAZyme
Location: 12746 - 13858 (+)
Type: CAZyme
Location: 12746 - 13858 (+)
Gene ID: Rep_169_c_194_10
Type: CAZyme
Location: 13855 - 14823 (+)
Type: CAZyme
Location: 13855 - 14823 (+)
Gene ID: Rep_169_c_194_11
Type: CAZyme
Location: 15057 - 17597 (+)
Type: CAZyme
Location: 15057 - 17597 (+)
Gene ID: Rep_169_c_194_12
Type: CAZyme
Location: 17602 - 18612 (+)
Type: CAZyme
Location: 17602 - 18612 (+)
Gene ID: Rep_169_c_194_13
Type: CAZyme
Location: 18662 - 20002 (+)
Type: CAZyme
Location: 18662 - 20002 (+)
Gene ID: Rep_169_c_194_14
Type: CAZyme
Location: 20016 - 21188 (+)
Type: CAZyme
Location: 20016 - 21188 (+)
Gene ID: Rep_169_c_194_15
Type: TC
Location: 21192 - 22565 (+)
Type: TC
Location: 21192 - 22565 (+)
Gene ID: Rep_169_c_194_16
Type: CAZyme
Location: 22562 - 25147 (+)
Type: CAZyme
Location: 22562 - 25147 (+)
Gene ID: Rep_169_c_194_17
Type: CAZyme
Location: 25144 - 27075 (+)
Type: CAZyme
Location: 25144 - 27075 (+)
Gene ID: Rep_169_c_194_18
Type: pfam
Location: 27164 - 28138 (+)
Type: pfam
Location: 27164 - 28138 (+)
Gene ID: Rep_169_c_194_19
Type: CAZyme
Location: 28162 - 30126 (+)
Type: CAZyme
Location: 28162 - 30126 (+)
Gene ID: Rep_169_c_194_20
Type: pfam
Location: 30735 - 31625 (+)
Type: pfam
Location: 30735 - 31625 (+)
Gene ID: Rep_169_c_194_21
Type: TC
Location: 31631 - 33088 (+)
Type: TC
Location: 31631 - 33088 (+)
Gene ID: Rep_169_c_194_22
Type: pfam
Location: 33085 - 33855 (+)
Type: pfam
Location: 33085 - 33855 (+)
Gene ID: Rep_169_c_194_23
Type: TC
Location: 33868 - 35418 (+)
Type: TC
Location: 33868 - 35418 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900545525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.