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Cluster: Rep_169_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_169_c_27 Rep_169_c_27_3 3982 5199 + GT30
pfam Rep_169_c_27 Rep_169_c_27_4 5279 6331 - DUF4435
pfam Rep_169_c_27 Rep_169_c_27_5 6353 7165 - ABC_tran | AAA_15 | AAA_21
CAZyme Rep_169_c_27 Rep_169_c_27_6 7521 9422 - GH13_46
CAZyme Rep_169_c_27 Rep_169_c_27_7 9435 11345 - GH13_14
CAZyme Rep_169_c_27 Rep_169_c_27_8 11447 13576 - GH97
CAZyme Rep_169_c_27 Rep_169_c_27_9 13727 16432 - GH77
TC Rep_169_c_27 Rep_169_c_27_10 16591 17907 - 2.A.2.6.2
TF Rep_169_c_27 Rep_169_c_27_11 17981 18985 - LacI
NULL(UNKNOWN) Rep_169_c_27 Rep_169_c_27_12 19170 19292 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_169_c_27 Rep_169_c_27_13 19380 22433 + 1.B.14.6.1
TC Rep_169_c_27 Rep_169_c_27_14 22459 24096 + 8.A.46.1.1
Gene ID: Rep_169_c_27_3
Type: CAZyme
Location: 3982 - 5199 (+)
Gene ID: Rep_169_c_27_4
Type: pfam
Location: 5279 - 6331 (-)
Gene ID: Rep_169_c_27_5
Type: pfam
Location: 6353 - 7165 (-)
Gene ID: Rep_169_c_27_6
Type: CAZyme
Location: 7521 - 9422 (-)
Gene ID: Rep_169_c_27_7
Type: CAZyme
Location: 9435 - 11345 (-)
Gene ID: Rep_169_c_27_8
Type: CAZyme
Location: 11447 - 13576 (-)
Gene ID: Rep_169_c_27_9
Type: CAZyme
Location: 13727 - 16432 (-)
Gene ID: Rep_169_c_27_10
Type: TC
Location: 16591 - 17907 (-)
Gene ID: Rep_169_c_27_11
Type: TF
Location: 17981 - 18985 (-)
Gene ID: Rep_169_c_27_12
Type:
Location: 19170 - 19292 (+)
Gene ID: Rep_169_c_27_13
Type: TC
Location: 19380 - 22433 (+)
Gene ID: Rep_169_c_27_14
Type: TC
Location: 22459 - 24096 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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