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Cluster: Rep_169_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_169_c_99 Rep_169_c_99_1 727 1926 - GT19
pfam Rep_169_c_99 Rep_169_c_99_2 1975 2754 - SurE
TC Rep_169_c_99 Rep_169_c_99_3 2912 3676 + 8.A.3.2.3
pfam Rep_169_c_99 Rep_169_c_99_4 3687 4574 + ParBc | HTH_ParB | ParB_dimer
pfam Rep_169_c_99 Rep_169_c_99_5 4590 5312 + DUF5683
CAZyme Rep_169_c_99 Rep_169_c_99_6 5339 6691 + GH23
STP Rep_169_c_99 Rep_169_c_99_7 6750 9017 + ACT | HD
CAZyme Rep_169_c_99 Rep_169_c_99_8 9057 10034 + CE8
Gene ID: Rep_169_c_99_1
Type: CAZyme
Location: 727 - 1926 (-)
Gene ID: Rep_169_c_99_2
Type: pfam
Location: 1975 - 2754 (-)
Gene ID: Rep_169_c_99_3
Type: TC
Location: 2912 - 3676 (+)
Gene ID: Rep_169_c_99_4
Type: pfam
Location: 3687 - 4574 (+)
Gene ID: Rep_169_c_99_5
Type: pfam
Location: 4590 - 5312 (+)
Gene ID: Rep_169_c_99_6
Type: CAZyme
Location: 5339 - 6691 (+)
Gene ID: Rep_169_c_99_7
Type: STP
Location: 6750 - 9017 (+)
Gene ID: Rep_169_c_99_8
Type: CAZyme
Location: 9057 - 10034 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_169_c_99_4 vegetarian > vegan 1.39336 0.02115

🧭 Explore Read Mapping of CGC

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